Fixed italicised Units in sdec_plot #1446

DhruvSondhi · 2021-02-02T06:13:30Z

This PR tries to Fix #1445

Description

Changed the labels to as to match the comment as mentioned

Motivation and Context

Fixes #1445

How Has This Been Tested?

Testing pipeline
Reference Data Comparison following these instructions
Other (please describe)

Local Changes

Screenshots (if appropriate):

Types of changes

Bug fix (non-breaking change which fixes an issue)
New feature (non-breaking change which adds functionality)
Breaking change (fix or feature that would cause existing functionality to not work as expected)
None of the above (please describe)

Checklist:

My code follows the code style of this project
My change requires a change to the documentation
I have updated the documentation accordingly
I have built the documentation on my fork following these instructions
I have assigned and requested two reviewers for this pull request

codecov · 2021-02-02T06:23:19Z

Codecov Report

Merging #1446 (7947f9a) into master (b9ab7c8) will not change coverage.
The diff coverage is n/a.

@@           Coverage Diff           @@
##           master    #1446   +/-   ##
=======================================
  Coverage   71.13%   71.13%           
=======================================
  Files          67       67           
  Lines        5523     5523           
=======================================
  Hits         3929     3929           
  Misses       1594     1594

Impacted Files	Coverage Δ
tardis/tardis/widgets/sdec_plot.py	`16.28% <0.00%> (ø)`

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jaladh-singhal · 2021-02-02T09:32:54Z

@DhruvSondhi thanks for this - can you show the screenshots comparing how plot looks like before & after these changes?

DhruvSondhi · 2021-02-02T13:44:41Z

Hello @jaladh-singhal ... I am afraid that I don't know the code where I can check this plot ... Can you please share a boilerplate test code or please guide me where I can find the same so that I can plot this graph 😄
PS: I ran the tests & reformated code & hence found not issues :)

DhruvSondhi · 2021-02-03T05:07:32Z

Hello, I found the way to make the plot but I am facing an issue with the quickstart data set & representation. The error seems to be something related to Pandas not able to pass a key in a list format. [Check this link for the error which is KeyError]
Check this Gist out ... Please do advise how I can rectify this? 🤔

jaladh-singhal · 2021-02-03T09:15:35Z

Hello @jaladh-singhal ... I am afraid that I don't know the code where I can check this plot ... Can you please share a boilerplate test code or please guide me where I can find the same so that I can plot this graph smile

Sorry for late reply. I'm actually working on adding a demo notebook for SDEC plot, you can download and use it from here

Hello, I found the way to make the plot but I am facing an issue with the quickstart data set & representation. The error seems to be something related to Pandas not able to pass a key in a list format. [Check this link for the error which is KeyError]
Check this Gist out ... Please do advise how I can rectify this?

@DhruvSondhi this seems strange. I hope you're using the latest tardis codebase and using development installation by python setup.py develop? Also if you have ran quickstart notebook before sucessfully, can you compare between what is different in your development environment now?

DhruvSondhi · 2021-02-03T09:45:22Z

Thank you very much @jaladh-singhal for the reply 😄 ... Yes I do seem so this is a problem and I have opened an issue #1447 ... Please check this issue out :)
Update: Fixed by downgrading Python version to 3.7 ... Thanks to @jamesgillanders :)

DhruvSondhi · 2021-02-03T09:46:18Z

Also, I have found some more issues which are not that important but are present so I will discuss in another issue 😉

DhruvSondhi · 2021-02-04T13:53:43Z

@jaladh-singhal Also, there is a minor change in the notebook
Instead of

from tardis.widgets import SEDecPlotter

It should be

from tardis.widgets import SDECPlotter

in this notebook

DhruvSondhi · 2021-02-06T10:45:48Z

Hello @jaladh-singhal, I got it working at last ... I do suggest a change which is that this line:

be at the top of the cell execution than at the bottom of the execution as it is very easy to skim over unnoticed 😄
{PS: Please change the virt_packet_logging: True to virtual_packet_logging: True in the above code snippet }

DhruvSondhi · 2021-02-06T11:01:47Z

So atlas, @jaladh-singhal these are the screenshots (And yes they are awesome 😉 , thanks to @jamesgillanders)

[Luminosity]
Before:

After:

[Flux]
Before:

After:

{Fixed this in the commit below ~~PS: that italics F(lambda) & L(lambda) are due to that lambda passed ... I can try to fix them too but I am not sure about them 😓~~ }

jaladh-singhal · 2021-02-06T13:45:40Z

@DhruvSondhi regarding your suggestions of SDECPlotter and of virtual_packet_logging, good catch! They have already been accounted in #1438 since I told you I was working on this notebook - you can access them if you re-download the notebook now.

jaladh-singhal · 2021-02-06T13:47:58Z

Hello @jaladh-singhal, I got it working at last ... I do suggest a change which is that this line:

be at the top of the cell execution than at the bottom of the execution as it is very easy to skim over unnoticed 😄

@jamesgillanders @ycamacho do you think we should move it above, i.e. before run_tardis() cell?

jaladh-singhal · 2021-02-06T13:55:33Z

@DhruvSondhi the screenshots look good. @jamesgillanders can you double check that you wanted Luminosity instead of L_{\lambda} and same for flux (rest looks good to me)?

jaladh-singhal · 2021-02-06T14:01:00Z

Note: @jamesgillanders don't merge it until #1438 is merged and @DhruvSondhi rebases this PR

DhruvSondhi · 2021-02-06T14:15:46Z

Note: @jamesgillanders don't merge it until #1438 is merged and @DhruvSondhi rebases this PR

Sure I can do that ... No issues 😄

jamesgillanders

See comments in code - the only that this PR should be changing is the italicised units in the x and y axes. Leave the F_lambda and L_lambda as is

jamesgillanders · 2021-02-08T12:29:24Z

tardis/widgets/sdec_plot.py

@@ -876,10 +876,14 @@ def generate_plot_mpl(
        self.ax.set_xlabel(r"Wavelength $[\AA]$", fontsize=12)


this x-axis unit is still italicised

Yes, I will do that too but the problem didn't seem to occur in the X-axis though I will hard code it that way :)

jamesgillanders · 2021-02-08T12:30:52Z

tardis/widgets/sdec_plot.py

@@ -876,10 +876,14 @@ def generate_plot_mpl(
        self.ax.set_xlabel(r"Wavelength $[\AA]$", fontsize=12)
        if distance:  # Set y-axis label for flux
            self.ax.set_ylabel(
-                r"$F_{\lambda}$ [erg/s/cm^{2}/$\AA$]", fontsize=12
+                r"Flux [erg $\mathrm{s^{-1}}$ $\mathrm{cm^{-2}}$ $\mathrm{\AA^{-1}}$]",
+                fontsize=12,


There seems to be some confusion about what to change on the axis labels - I didn't help things with a vague comment, but I am not proposing any change to the actual label - just that the Angstrom unit is no longer italicised. The comment posted was just grabbed from one of my programs illustrating how to use mathrm. Can this be reverted back to F_lambda?

Yes, No Issues but the F_lambda & L_lambda will be italicised ... I will update the screenshots with the same :)

jamesgillanders · 2021-02-08T12:31:06Z

tardis/widgets/sdec_plot.py

+            self.ax.set_ylabel(
+                r"Luminosity [erg $\mathrm{s^{-1}}$ $\mathrm{\AA^{-1}}$]",
+                fontsize=12,
+            )


Same as above - roll back to L_lambda

Sure, No problems :)

jamesgillanders · 2021-02-08T12:34:07Z

@jaladh-singhal - I have no strong opinions on where exactly the virtual_packet_logging flag should appear. Whatever you think is most suitable is fine.

DhruvSondhi · 2021-02-08T16:36:17Z

Just pushing changes ... this looks awesome & good to go :)
{PS: Do I need to squash the chances? 🤔}

jamesgillanders

the code modifications fix the flagged issue - happy for it to be merged, pending second review

DhruvSondhi · 2021-02-12T04:46:33Z

Hello @jamesgillanders & @jaladh-singhal , I have rebased this branch upon the updated master ... Please check & confirm the same 😄

jaladh-singhal

Looks good to me!

* Fixed italicised Units in sdec_plot * Fixed Italics Luminosity & Flux Lambda representation * Reverted back to old notation

DhruvSondhi force-pushed the italics-unit branch from e84b0f1 to e61075c Compare February 2, 2021 06:36

jaladh-singhal requested review from jamesgillanders and jaladh-singhal February 2, 2021 09:33

jaladh-singhal added bugfix 🪲 visualization labels Feb 2, 2021

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jamesgillanders reviewed Feb 8, 2021

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jaladh-singhal mentioned this pull request Feb 8, 2021

Add documentation for Spectral Element Decomposition Plot #1438

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DhruvSondhi requested a review from jamesgillanders February 8, 2021 16:38

jamesgillanders approved these changes Feb 8, 2021

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DhruvSondhi added 3 commits February 12, 2021 10:14

Fixed italicised Units in sdec_plot

8cddbaa

Fixed Italics Luminosity & Flux Lambda representation

d611bb3

Reverted back to old notation

7947f9a

DhruvSondhi force-pushed the italics-unit branch from 7fbbd52 to 7947f9a Compare February 12, 2021 04:45

jaladh-singhal approved these changes Feb 12, 2021

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jaladh-singhal merged commit b2b6a6f into tardis-sn:master Feb 12, 2021

jaladh-singhal mentioned this pull request Feb 12, 2021

Reproduced SDEC plots in demo notebook #1457

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DhruvSondhi deleted the italics-unit branch March 11, 2021 05:59

atharva-2001 pushed a commit to atharva-2001/tardis that referenced this pull request Oct 1, 2021

Fixed italicised Units in sdec_plot (tardis-sn#1446)

d4e15a8

* Fixed italicised Units in sdec_plot * Fixed Italics Luminosity & Flux Lambda representation * Reverted back to old notation

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Fixed italicised Units in sdec_plot #1446

Fixed italicised Units in sdec_plot #1446

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		@@ -876,10 +876,14 @@ def generate_plot_mpl(
		self.ax.set_xlabel(r"Wavelength $[\AA]$", fontsize=12)

Fixed italicised Units in sdec_plot #1446

Fixed italicised Units in sdec_plot #1446

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DhruvSondhi commented Feb 2, 2021

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