Update class definitions to match the new tatami interface. #109

	on:
	push:
	branches:
	- master
	pull_request:

	name: Run tests

	jobs:
	build:
	name: Run tests
	runs-on: ubuntu-latest
	container: bioconductor/bioconductor_docker:RELEASE_3_19
	strategy:
	fail-fast: false
	matrix:
	parallel: [true, false]

	steps:
	- uses: actions/checkout@v2

	- name: Get latest CMake
	uses: lukka/get-cmake@latest

	- name: Configure the build
	run: cmake -S . -B build

	- name: Set directories
	run: \|
	echo "R_PKG_DIR=${R_HOME}/site-library" >> $GITHUB_ENV

	- name: Restore the package directory
	uses: actions/cache@v2
	with:
	path: ${{ env.R_PKG_DIR }}
	key: preinstalled-packages

	- name: Install dependencies
	shell: Rscript {0}
	run: \|
	BiocManager::install(c("DelayedArray", "Rcpp", "testthat"))

	- name: Turn off parallelization flags
	if: ${{ !matrix.parallel }}
	run: \|
	cat tests/src/Makevars \| grep -v "TEST_CUSTOM_PARALLEL" > .tmp
	cat .tmp
	mv .tmp tests/src/Makevars

	- name: Install the test package
	run: R CMD INSTALL tests

	- name: Run the tests
	shell: Rscript {0}
	run: \|
	setwd("tests/tests/testthat")
	library(DelayedArray)
	library(testthat)
	source("setup.R")
	for (x in list.files(pattern="test")) {
	cat(x, "\n")
	testthat::test_file(x)
	}
	#testthat::test_file("testthat.R", reporter=testthat::default_reporter(), stop_on_failure=TRUE)

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