Test omdctk Program

Description

The Test omdctk program allows to test all the programs of the package using an ENA Dataset (ENA project PRJEB10949) and an External Dataset (GSA project PRJCA001214) as examples. This program is especially useful to check that the installation of the package has been successful and to get an example of the files generated during a complete dataset curation process.

Arguments

Usage:

test_omdctk [-h] -o OUTPUT_DIRECTORY [-x] [-v]

Options:

Parameter	Description
-h, --help	Show help message and exit.
-o, --output_directory	Output Directory. Indicate the path to the Output Directory to save the resulting files.
-x, --plain_text	Plain Text Mode (Optional). If indicated, it will enable Plain Text mode, and text will appear without colors.
-v, --version	Show program's version number and exit.

Examples

Commands:

• Test package programs with colored text stdout:

test_omdctk -o Example

• Test package programs with plain text stdout:

test_omdctk -o Example --plain_text

To see a full and detailed example of dataset curation, see the Tutorial Full Example page.