Table of contents

• TC-iReMet2
• Technologies
• Setup
• Metabolite-Ratios
• Transcriptomic-Ratios

TC-iReMet2

Code-Repository for TC-iReMet2.

Technologies

Project is created with:

• Matlab2018
• R (partly used for analysis)

Setup

To run this project, go to the TC-iReMet2_algorithm folder and run nMAIN() in the Matlab console.

• If you wish to run TC-iReMet2 with different parameters, do so by changing the 'AnalysisParameters.init' file
• Paths might need to be adjusted based on your chosen folder structure
• Files neccessary to run TC-iReMet2 are located in the 'Data' folder
• Results are saved to the 'Results' folder with a following folder structure depending on the chosen run parameters
• Metabolite- and Transcriptomic-Ratios were calculated seperately

Metabolite-Ratios

For the creation of the metabolite ratios see '/data/processed_data/metabolite_data'.

• See 'A_README_ProcedureOfMakingAllTables.txt' for further details

Transcriptomic-Ratios

For the creation of the transcriptomic ratios see '/data/processed_data/transcription_data'

• See '01_README.txt' for further details.
• 'createefluxtable.m' creates and calculates the transcriptomic ratio constraints