Updated MANIFEST.in and .gitignore

Signed-off-by: Timothy Click <tclick@alumni.ou.edu>

.gitignore

@@ -1,110 +1,10 @@
-<<<<<<< HEAD
-# Byte-compiled / optimized / DLL files
-__pycache__/
 *.py[cod]
-*$py.class
-=======
-*.py[cod]
->>>>>>> Add initial project skeleton.
+.*.npz
+*.log
 
 # C extensions
 *.so
 
-<<<<<<< HEAD
-# Distribution / packaging
-.Python
-env/
-build/
-develop-eggs/
-dist/
-downloads/
-eggs/
-.eggs/
-lib/
-lib64/
-parts/
-sdist/
-var/
-wheels/
-*.egg-info/
-.installed.cfg
-*.egg
-
-# PyInstaller
-#  Usually these files are written by a python script from a template
-#  before PyInstaller builds the exe, so as to inject date/other infos into it.
-*.manifest
-*.spec
-
-# Installer logs
-pip-log.txt
-pip-delete-this-directory.txt
-
-# Unit test / coverage reports
-htmlcov/
-.tox/
-.coverage
-.coverage.*
-.cache
-nosetests.xml
-coverage.xml
-*.cover
-.hypothesis/
-
-# Translations
-*.mo
-*.pot
-
-# Django stuff:
-*.log
-local_settings.py
-
-# Flask stuff:
-instance/
-.webassets-cache
-
-# Scrapy stuff:
-.scrapy
-
-# Sphinx documentation
-docs/_build/
-
-# PyBuilder
-target/
-
-# Jupyter Notebook
-.ipynb_checkpoints
-
-# pyenv
-.python-version
-
-# celery beat schedule file
-celerybeat-schedule
-
-# SageMath parsed files
-*.sage.py
-
-# dotenv
-.env
-
-# virtualenv
-.venv
-venv/
-ENV/
-
-# Spyder project settings
-.spyderproject
-.spyproject
-
-# Rope project settings
-.ropeproject
-
-# mkdocs documentation
-/site
-
-# mypy
-.mypy_cache/
-=======
 # Packages
 *.egg
 *.egg-info
@@ -164,4 +64,3 @@ docs/_build
 .bootstrap
 .appveyor.token
 *.bak
->>>>>>> Add initial project skeleton.

MANIFEST.in

@@ -7,6 +7,7 @@ include .bumpversion.cfg
 include .coveragerc
 include .cookiecutterrc
 include .editorconfig
+include .flake8
 
 include AUTHORS.rst
 include CHANGELOG.rst
@@ -16,4 +17,7 @@ include README.rst
 
 include tox.ini .travis.yml appveyor.yml requirements.txt
 
-global-exclude *.py[cod] __pycache__ *.so *.dylib
+global-exclude *.py[cod] __pycache__ *.so *.dylib .DS_Store .*.npz
+
+# added by check_manifest.py
+include *.yaml