Changed ParamTable constructor.

Signed-off-by: Timothy Click <tcthepoet@yahoo.com>

src/fluctmatch/analysis/paramtable.py

@@ -65,20 +65,17 @@ class ParamTable(object):
     """Create a parameter table time series for distance or coupling strength.
 
     """
-    def __init__(self, data_dir, prefix="fluctmatch", tbltype="Kb", ressep=3):
+    def __init__(self, prefix="fluctmatch", tbltype="Kb", ressep=3):
         """
         Parameters
         ----------
-        data_dir : str
-            Parent directory for parameter files
         prefix : str, optional
             Filename prefix for files
         tbltype : {"Kb", "b0"}, optional
             Table to create (coupling strength or bond distance)
         ressep : int, optional
             Number of residues to exclude from interactions.
         """
-        self._datadir = data_dir
         self._prefix = prefix
         self._tbltype = tbltype
         self._ressep = ressep

src/fluctmatch/commands/cmd_diff.py

@@ -87,10 +87,10 @@ def cli(outdir, ressep, table1, table2):
     -------
 
     """
-    table_1 = paramtable.ParamTable(outdir, ressep=ressep)
+    table_1 = paramtable.ParamTable(ressep=ressep)
     table_1.from_file(table1)
 
-    table_2 = paramtable.ParamTable(outdir, ressep=ressep)
+    table_2 = paramtable.ParamTable(ressep=ressep)
     table_2.from_file(table2)
 
     d_table = table_1 - table_2

src/fluctmatch/commands/cmd_table.py

@@ -88,7 +88,7 @@
     is_flag=True,
 )
 def cli(data_dir, outdir, prefix, tbltype, ressep, verbose):
-    pt = paramtable.ParamTable(data_dir, prefix=prefix, tbltype=tbltype, ressep=ressep)
+    pt = paramtable.ParamTable(prefix=prefix, tbltype=tbltype, ressep=ressep)
     pt.run(verbose=verbose)
 
     # Write the various tables to different files.