3.8.1

Features:

• Memory/Time reservation adjusted

3.8.0

Features:

• STAR indexes
• Salmon index
• Genepred file formats
• Re-use of indexed files

3.7.0

Fix:

• Blacklist download link updated
• Agat temporary file handled

Features:

• Include bowtie2 indexes

3.6.2

Fix:

• Protect against nan values in genome queries

3.6.1

Features:

• Documentation udpate

Fix:

• blacklist merge fixed

3.6.0

Features:

• Separate resources among subdirectories holding genome names
• Snakemake up to 8.13.0
• Snakemake wrappers up to 3.12.0

3.5.0

Features:

• Changes in configuration: parameters now holds the name of the rule they refer to
• Log, Benchmarks, and temp files now point to a directory named from their rule name
• Reservation made according to Gustave Roussy's Flamingo tests on Ensembl's GRCh38
• snakemake-wrappers update to 3.10.2

3.4.4

Features:

• Documentation udpate

3.4.3

Features:

• Schema update
• Cleaning

3.4.2

Features:

• Use human readable functions to replace raw lookups
• snakemake-wrappers update to 3.7.0