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p-values of 0.0 #19
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Hi, I'm running CellPhoneDB with a --result-precision of 10 and I get a lot of straight 0.0 in the p-values output. I wonder if I should consider them as p<0.0000000001 or if there is another way to look at it? Like in the Fig5 a of the Single-cell reconstruction of the early maternal–fetal interface in humans paper I would like to plot the results for some clusters and to adjust the size of my dots according to the pvalue, so p-values of zero are a little problematic for me. Thank you! |
Hi, |
I am having the same issue. I am using a single cell dataset with ~20k cells, running with the default 1000 permutations, and my p-values with CellPhoneDB are either 0.0 or 1.0. There are a few p-values that are in between, but not many. Is this what one should expect? |
Hi, |
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