BruKitchen

utilities for dealing with bruker nmr/mri systems and data

Matlab

To use these utilities, run the script brukitchen_setup.m to compile the mex programs from within Matlab, then add the matlab directory to your path:

Requires a system with a C++11-capable compiler.

>> cd .../path/to/BruKitchen/matlab
>> brukitchen_setup
>> addpath(['.../path/to/BruKitchen/matlab']);
% then read an experiment directory:
>> ex = read_bru_experiment('/opt/data/.../myexperiment')
ex = 
  struct with fields:

      acqu: [1×1 struct]
     acqus: [1×1 struct]
      acqp: [1×1 struct]
    method: [1×1 struct]
     pdata: [1×1 containers.Map]
       fid: [2048×1 double]
>> ex.acqus.SW_h
ans =
        5000

Files
read_bru_experiment	Read all the files and data from an experiment
mexldr.cpp	Read a single jcamp-dx parameter file

Python

Install

Build the python modules in-place.

rm jcampdx.so
python setup.py build_ext --inplace

Index

File
BruKitchen.py	utility functions for controlling the spectrometer
PvCmd.py	classes for wrapping control of ParaVision
pvshell.py	a command-line shell for controlling ParaVision
procall.py	example of how to process a series of PV experiments