Steps for use:
- Install USEARCH (https://www.drive5.com/usearch/download.html) and R (https://www.r-project.org/).
- Download example .fastq files (https://www.mothur.org/MiSeqDevelopmentData.html).
- Download usearch_script.bash and R_script.R (https://github.com/thackmann/sequence-identities).
- Run USEARCH_script.bash on USEARCH.
- Run R_script.bash on R.