v0.19.0 patch: Added receive benchmark; Fixed Receiver excessive mem …

…usage introduced in 0.17 (#3943) * Added receive benchmark, baseline. ``` goos: linux goarch: amd64 pkg: github.com/thanos-io/thanos/pkg/receive BenchmarkHandlerReceiveHTTP BenchmarkHandlerReceiveHTTP/typical_labels_under_1KB,_500_of_them. BenchmarkHandlerReceiveHTTP/typical_labels_under_1KB,_500_of_them./OK BenchmarkHandlerReceiveHTTP/typical_labels_under_1KB,_500_of_them./OK-12 22260 1550152 ns/op 1380340 B/op 6093 allocs/op BenchmarkHandlerReceiveHTTP/typical_labels_under_1KB,_500_of_them./conflict_errors BenchmarkHandlerReceiveHTTP/typical_labels_under_1KB,_500_of_them./conflict_errors-12 6619 6430408 ns/op 4522487 B/op 26118 allocs/op BenchmarkHandlerReceiveHTTP/typical_labels_under_1KB,_5000_of_them. BenchmarkHandlerReceiveHTTP/typical_labels_under_1KB,_5000_of_them./OK BenchmarkHandlerReceiveHTTP/typical_labels_under_1KB,_5000_of_them./OK-12 2695 17208794 ns/op 15072963 B/op 60441 allocs/op BenchmarkHandlerReceiveHTTP/typical_labels_under_1KB,_5000_of_them./conflict_errors BenchmarkHandlerReceiveHTTP/typical_labels_under_1KB,_5000_of_them./conflict_errors-12 474 72533286 ns/op 46396932 B/op 260141 allocs/op BenchmarkHandlerReceiveHTTP/extremely_large_label_value_10MB,_10_of_them BenchmarkHandlerReceiveHTTP/extremely_large_label_value_10MB,_10_of_them/OK BenchmarkHandlerReceiveHTTP/extremely_large_label_value_10MB,_10_of_them/OK-12 270 137050518 ns/op 226595379 B/op 132 allocs/op BenchmarkHandlerReceiveHTTP/extremely_large_label_value_10MB,_10_of_them/conflict_errors BenchmarkHandlerReceiveHTTP/extremely_large_label_value_10MB,_10_of_them/conflict_errors-12 21 1616025443 ns/op 698724321 B/op 408 allocs/op PASS Process finished with exit code 0 ``` Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Copy labels. ``` GOROOT=/home/bwplotka/.gvm/gos/go1.15 #gosetup GOPATH=/home/bwplotka/Repos/thanosgopath #gosetup /home/bwplotka/.gvm/gos/go1.15/bin/go test -c -o /tmp/___BenchmarkHandlerReceiveHTTP_in_github_com_thanos_io_thanos_pkg_receive github.com/thanos-io/thanos/pkg/receive #gosetup /tmp/___BenchmarkHandlerReceiveHTTP_in_github_com_thanos_io_thanos_pkg_receive -test.v -test.bench ^\QBenchmarkHandlerReceiveHTTP\E$ -test.run ^$ -test.benchmem -test.benchtime=30s goos: linux goarch: amd64 pkg: github.com/thanos-io/thanos/pkg/receive BenchmarkHandlerReceiveHTTP BenchmarkHandlerReceiveHTTP/typical_labels_under_1KB,_500_of_them BenchmarkHandlerReceiveHTTP/typical_labels_under_1KB,_500_of_them/OK BenchmarkHandlerReceiveHTTP/typical_labels_under_1KB,_500_of_them/OK-12 25887 1537262 ns/op 1380023 B/op 6092 allocs/op BenchmarkHandlerReceiveHTTP/typical_labels_under_1KB,_500_of_them/conflict_errors BenchmarkHandlerReceiveHTTP/typical_labels_under_1KB,_500_of_them/conflict_errors-12 4237 7547968 ns/op 4522583 B/op 26118 allocs/op BenchmarkHandlerReceiveHTTP/typical_labels_under_1KB,_5000_of_them BenchmarkHandlerReceiveHTTP/typical_labels_under_1KB,_5000_of_them/OK BenchmarkHandlerReceiveHTTP/typical_labels_under_1KB,_5000_of_them/OK-12 2205 16513380 ns/op 15071092 B/op 60420 allocs/op BenchmarkHandlerReceiveHTTP/typical_labels_under_1KB,_5000_of_them/conflict_errors BenchmarkHandlerReceiveHTTP/typical_labels_under_1KB,_5000_of_them/conflict_errors-12 525 67278233 ns/op 46396645 B/op 260141 allocs/op BenchmarkHandlerReceiveHTTP/extremely_large_label_value_10MB,_10_of_them BenchmarkHandlerReceiveHTTP/extremely_large_label_value_10MB,_10_of_them/OK BenchmarkHandlerReceiveHTTP/extremely_large_label_value_10MB,_10_of_them/OK-12 285 148049189 ns/op 226596168 B/op 132 allocs/op BenchmarkHandlerReceiveHTTP/extremely_large_label_value_10MB,_10_of_them/conflict_errors BenchmarkHandlerReceiveHTTP/extremely_large_label_value_10MB,_10_of_them/conflict_errors-12 20 1731361499 ns/op 698722550 B/op 401 allocs/op PASS Process finished with exit code 0 ``` Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Addded bench., Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Fix. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Improved API. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Changelog. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com> * Addressed Lucas comments. Signed-off-by: Bartlomiej Plotka <bwplotka@gmail.com>
thanos-io · Mar 20, 2021 · b446fae · b446fae
1 parent 38d78b5
commit b446fae
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diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -10,7 +10,7 @@ NOTE: As semantic versioning states all 0.y.z releases can contain breaking chan
 
 We use _breaking :warning:_ to mark changes that are not backward compatible (relates only to v0.y.z releases.)
 
-## [v0.19.0-rc.1](https://github.com/thanos-io/thanos/releases/tag/v0.19.0-rc.1) - 2021.03.09
+## [v0.19.0-rc.1](https://github.com/thanos-io/thanos/releases/tag/v0.19.0-rc.2) - 2021.03.22
 
 ### Added
 
@@ -36,6 +36,7 @@ We use _breaking :warning:_ to mark changes that are not backward compatible (re
 - [#3815](https://github.com/thanos-io/thanos/pull/3815) Receive: Improve handling of empty time series from clients
 - [#3795](https://github.com/thanos-io/thanos/pull/3795) s3: A truncated "get object" response is reported as error.
 - [#3899](https://github.com/thanos-io/thanos/pull/3899) Receive: Correct the inference of client gRPC configuration.
+- [#3943](https://github.com/thanos-io/thanos/pull/3943): Receive: Fixed memory regression introduced in v0.17.0.
 
 ### Changed
 

diff --git a/pkg/receive/handler.go b/pkg/receive/handler.go
@@ -277,6 +277,7 @@ func (h *Handler) receiveHTTP(w http.ResponseWriter, r *http.Request) {
 	span, ctx := tracing.StartSpan(r.Context(), "receive_http")
 	defer span.Finish()
 
+	// TODO(bwplotka): Optimize readAll https://github.com/thanos-io/thanos/pull/3334/files.
 	compressed, err := ioutil.ReadAll(r.Body)
 	if err != nil {
 		http.Error(w, err.Error(), http.StatusInternalServerError)
@@ -290,6 +291,9 @@ func (h *Handler) receiveHTTP(w http.ResponseWriter, r *http.Request) {
 		return
 	}
 
+	// NOTE: Due to zero copy ZLabels, Labels used from WriteRequests keeps memory
+	// from the whole request. Ensure that we always copy those when we want to
+	// store them for longer time.
 	var wreq prompb.WriteRequest
 	if err := proto.Unmarshal(reqBuf, &wreq); err != nil {
 		http.Error(w, err.Error(), http.StatusBadRequest)
@@ -310,7 +314,7 @@ func (h *Handler) receiveHTTP(w http.ResponseWriter, r *http.Request) {
 		tenant = h.options.DefaultTenantID
 	}
 
-	// exit early if the request contained no data
+	// Exit early if the request contained no data.
 	if len(wreq.Timeseries) == 0 {
 		level.Info(h.logger).Log("msg", "empty timeseries from client", "tenant", tenant)
 		return

diff --git a/pkg/receive/handler_test.go b/pkg/receive/handler_test.go
@@ -7,9 +7,16 @@ import (
 	"bytes"
 	"context"
 	"fmt"
+	"io/ioutil"
+	"math"
 	"math/rand"
 	"net/http"
 	"net/http/httptest"
+	"os"
+	"path/filepath"
+	"runtime"
+	"runtime/pprof"
+	"strings"
 	"sync"
 	"testing"
 	"time"
@@ -18,9 +25,12 @@ import (
 	"github.com/gogo/protobuf/proto"
 	"github.com/golang/snappy"
 	"github.com/pkg/errors"
+	"github.com/prometheus/client_golang/prometheus"
 	"github.com/prometheus/prometheus/pkg/labels"
 	"github.com/prometheus/prometheus/storage"
 	"github.com/prometheus/prometheus/tsdb"
+	"github.com/thanos-io/thanos/pkg/block/metadata"
+	"github.com/thanos-io/thanos/pkg/runutil"
 	"google.golang.org/grpc"
 	"google.golang.org/grpc/codes"
 	"google.golang.org/grpc/status"
@@ -175,13 +185,11 @@ func TestDetermineWriteErrorCause(t *testing.T) {
 	}
 }
 
-func newHandlerHashring(appendables []*fakeAppendable, replicationFactor uint64) ([]*Handler, Hashring) {
-	cfg := []HashringConfig{
-		{
-			Hashring: "test",
-		},
-	}
-	var handlers []*Handler
+func newTestHandlerHashring(appendables []*fakeAppendable, replicationFactor uint64) ([]*Handler, Hashring) {
+	var (
+		cfg      = []HashringConfig{{Hashring: "test"}}
+		handlers []*Handler
+	)
 	// create a fake peer group where we manually fill the cache with fake addresses pointed to our handlers
 	// This removes the network from the tests and creates a more consistent testing harness.
 	peers := &peerGroup{
@@ -511,7 +519,7 @@ func TestReceiveQuorum(t *testing.T) {
 		},
 	} {
 		t.Run(tc.name, func(t *testing.T) {
-			handlers, hashring := newHandlerHashring(tc.appendables, tc.replicationFactor)
+			handlers, hashring := newTestHandlerHashring(tc.appendables, tc.replicationFactor)
 			tenant := "test"
 			// Test from the point of view of every node
 			// so that we know status code does not depend
@@ -850,7 +858,7 @@ func TestReceiveWithConsistencyDelay(t *testing.T) {
 		// to see all requests completing all the time, since we're using local
 		// network we are not expecting anything to go wrong with these.
 		t.Run(tc.name, func(t *testing.T) {
-			handlers, hashring := newHandlerHashring(tc.appendables, tc.replicationFactor)
+			handlers, hashring := newTestHandlerHashring(tc.appendables, tc.replicationFactor)
 			tenant := "test"
 			// Test from the point of view of every node
 			// so that we know status code does not depend
@@ -957,3 +965,233 @@ type fakeRemoteWriteGRPCServer struct {
 func (f *fakeRemoteWriteGRPCServer) RemoteWrite(ctx context.Context, in *storepb.WriteRequest, opts ...grpc.CallOption) (*storepb.WriteResponse, error) {
 	return f.h.RemoteWrite(ctx, in)
 }
+
+func BenchmarkHandlerReceiveHTTP(b *testing.B) {
+	benchmarkHandlerMultiTSDBReceiveRemoteWrite(testutil.NewTB(b))
+}
+
+func TestHandlerReceiveHTTP(t *testing.T) {
+	benchmarkHandlerMultiTSDBReceiveRemoteWrite(testutil.NewTB(t))
+}
+
+// tsOverrideTenantStorage is storage that overrides timestamp to make it have consistent interval.
+type tsOverrideTenantStorage struct {
+	TenantStorage
+
+	interval int64
+}
+
+func (s *tsOverrideTenantStorage) TenantAppendable(tenant string) (Appendable, error) {
+	a, err := s.TenantStorage.TenantAppendable(tenant)
+	return &tsOverrideAppendable{Appendable: a, interval: s.interval}, err
+}
+
+type tsOverrideAppendable struct {
+	Appendable
+
+	interval int64
+}
+
+func (a *tsOverrideAppendable) Appender(ctx context.Context) (storage.Appender, error) {
+	ret, err := a.Appendable.Appender(ctx)
+	return &tsOverrideAppender{Appender: ret, interval: a.interval}, err
+}
+
+type tsOverrideAppender struct {
+	storage.Appender
+
+	interval int64
+}
+
+var cnt int64
+
+func (a *tsOverrideAppender) Add(l labels.Labels, _ int64, v float64) (uint64, error) {
+	cnt += a.interval
+	return a.Appender.Add(l, cnt, v)
+}
+
+func (a *tsOverrideAppender) AddFast(ref uint64, _ int64, v float64) error {
+	cnt += a.interval
+	return a.Appender.AddFast(ref, cnt, v)
+}
+
+// serializeSeriesWithOneSample returns marshaled and compressed remote write requests like it would
+// be send to Thanos receive.
+// It has one sample and allow passing multiple series, in same manner as typical Prometheus would batch it.
+func serializeSeriesWithOneSample(t testing.TB, series [][]labelpb.ZLabel) []byte {
+	r := &prompb.WriteRequest{Timeseries: make([]prompb.TimeSeries, 0, len(series))}
+
+	for _, s := range series {
+		r.Timeseries = append(r.Timeseries, prompb.TimeSeries{
+			Labels: s,
+			// Timestamp does not matter, it will be overridden.
+			Samples: []prompb.Sample{{Value: math.MaxFloat64, Timestamp: math.MinInt64}},
+		})
+	}
+	body, err := proto.Marshal(r)
+	testutil.Ok(t, err)
+	return snappy.Encode(nil, body)
+}
+
+func benchmarkHandlerMultiTSDBReceiveRemoteWrite(b testutil.TB) {
+	dir, err := ioutil.TempDir("", "test_receive")
+	testutil.Ok(b, err)
+	defer func() { testutil.Ok(b, os.RemoveAll(dir)) }()
+
+	handlers, _ := newTestHandlerHashring([]*fakeAppendable{nil}, 1)
+	handler := handlers[0]
+
+	reg := prometheus.NewRegistry()
+
+	logger := log.NewNopLogger()
+	m := NewMultiTSDB(
+		dir, logger, reg, &tsdb.Options{
+			MinBlockDuration:  int64(2 * time.Hour / time.Millisecond),
+			MaxBlockDuration:  int64(2 * time.Hour / time.Millisecond),
+			RetentionDuration: int64(6 * time.Hour / time.Millisecond),
+			NoLockfile:        true,
+			StripeSize:        1, // Disable stripe pre allocation so we can have clear profiles.
+		},
+		labels.FromStrings("replica", "01"),
+		"tenant_id",
+		nil,
+		false,
+		metadata.NoneFunc,
+	)
+	defer func() { testutil.Ok(b, m.Close()) }()
+	handler.writer = NewWriter(logger, m)
+
+	testutil.Ok(b, m.Flush())
+	testutil.Ok(b, m.Open())
+
+	for _, tcase := range []struct {
+		name         string
+		writeRequest []byte
+	}{
+		{
+			name: "typical labels under 1KB, 500 of them",
+			writeRequest: serializeSeriesWithOneSample(b, func() [][]labelpb.ZLabel {
+				series := make([][]labelpb.ZLabel, 500)
+				for s := 0; s < len(series); s++ {
+					lbls := make([]labelpb.ZLabel, 10)
+					for i := 0; i < len(lbls); i++ {
+						// Label ~20B name, 50B value.
+						lbls[i] = labelpb.ZLabel{Name: fmt.Sprintf("abcdefghijabcdefghijabcdefghij%d", i), Value: fmt.Sprintf("abcdefghijabcdefghijabcdefghijabcdefghijabcdefghij%d", i)}
+					}
+					series[s] = lbls
+				}
+				return series
+			}()),
+		},
+		{
+			name: "typical labels under 1KB, 5000 of them",
+			writeRequest: serializeSeriesWithOneSample(b, func() [][]labelpb.ZLabel {
+				series := make([][]labelpb.ZLabel, 5000)
+				for s := 0; s < len(series); s++ {
+					lbls := make([]labelpb.ZLabel, 10)
+					for i := 0; i < len(lbls); i++ {
+						// Label ~20B name, 50B value.
+						lbls[i] = labelpb.ZLabel{Name: fmt.Sprintf("abcdefghijabcdefghijabcdefghij%d", i), Value: fmt.Sprintf("abcdefghijabcdefghijabcdefghijabcdefghijabcdefghij%d", i)}
+					}
+					series[s] = lbls
+				}
+				return series
+			}()),
+		},
+		{
+			name: "extremely large label value 10MB, 10 of them",
+			writeRequest: serializeSeriesWithOneSample(b, func() [][]labelpb.ZLabel {
+				series := make([][]labelpb.ZLabel, 10)
+				for s := 0; s < len(series); s++ {
+					lbl := &strings.Builder{}
+					lbl.Grow(1024 * 1024 * 10) // 10MB.
+					word := "abcdefghij"
+					for i := 0; i < lbl.Cap()/len(word); i++ {
+						_, _ = lbl.WriteString(word)
+					}
+					series[s] = []labelpb.ZLabel{{Name: "__name__", Value: lbl.String()}}
+				}
+				return series
+			}()),
+		},
+	} {
+		b.Run(tcase.name, func(b testutil.TB) {
+			handler.options.DefaultTenantID = fmt.Sprintf("%v-ok", tcase.name)
+			handler.writer.multiTSDB = &tsOverrideTenantStorage{TenantStorage: m, interval: 1}
+
+			// It takes time to create new tenant, wait for it.
+			{
+				app, err := m.TenantAppendable(handler.options.DefaultTenantID)
+				testutil.Ok(b, err)
+
+				ctx, cancel := context.WithTimeout(context.Background(), 10*time.Second)
+				defer cancel()
+
+				testutil.Ok(b, runutil.Retry(1*time.Second, ctx.Done(), func() error {
+					_, err = app.Appender(ctx)
+					return err
+				}))
+			}
+
+			b.Run("OK", func(b testutil.TB) {
+				n := b.N()
+				b.ResetTimer()
+				for i := 0; i < n; i++ {
+					r := httptest.NewRecorder()
+					handler.receiveHTTP(r, &http.Request{ContentLength: int64(len(tcase.writeRequest)), Body: ioutil.NopCloser(bytes.NewReader(tcase.writeRequest))})
+					testutil.Equals(b, http.StatusOK, r.Code, "got non 200 error: %v", r.Body.String())
+				}
+			})
+
+			handler.options.DefaultTenantID = fmt.Sprintf("%v-conflicting", tcase.name)
+			handler.writer.multiTSDB = &tsOverrideTenantStorage{TenantStorage: m, interval: -1} // Timestamp can't go down, which will cause conflict error.
+
+			// It takes time to create new tenant, wait for it.
+			{
+				app, err := m.TenantAppendable(handler.options.DefaultTenantID)
+				testutil.Ok(b, err)
+
+				ctx, cancel := context.WithTimeout(context.Background(), 10*time.Second)
+				defer cancel()
+
+				testutil.Ok(b, runutil.Retry(1*time.Second, ctx.Done(), func() error {
+					_, err = app.Appender(ctx)
+					return err
+				}))
+			}
+
+			// First request should be fine, since we don't change timestamp, rest is wrong.
+			r := httptest.NewRecorder()
+			handler.receiveHTTP(r, &http.Request{ContentLength: int64(len(tcase.writeRequest)), Body: ioutil.NopCloser(bytes.NewReader(tcase.writeRequest))})
+			testutil.Equals(b, http.StatusOK, r.Code, "got non 200 error: %v", r.Body.String())
+
+			b.Run("conflict errors", func(b testutil.TB) {
+				n := b.N()
+				b.ResetTimer()
+				for i := 0; i < n; i++ {
+					r := httptest.NewRecorder()
+					handler.receiveHTTP(r, &http.Request{ContentLength: int64(len(tcase.writeRequest)), Body: ioutil.NopCloser(bytes.NewReader(tcase.writeRequest))})
+					testutil.Equals(b, http.StatusConflict, r.Code, "%v", i)
+				}
+			})
+		})
+	}
+
+	runtime.GC()
+	// Take snapshot at the end to reveal how much memory we keep in TSDB.
+	testutil.Ok(b, Heap("../../"))
+
+}
+
+func Heap(dir string) (err error) {
+	if err := os.MkdirAll(dir, os.ModePerm); err != nil {
+		return err
+	}
+
+	f, err := os.Create(filepath.Join(dir, "mem.pprof"))
+	if err != nil {
+		return err
+	}
+	defer runutil.CloseWithErrCapture(&err, f, "close")
+	return pprof.WriteHeapProfile(f)
+}
diff --git a/pkg/receive/writer.go b/pkg/receive/writer.go
@@ -13,6 +13,7 @@ import (
 	"github.com/prometheus/prometheus/pkg/labels"
 	"github.com/prometheus/prometheus/storage"
 	"github.com/prometheus/prometheus/tsdb"
+	"github.com/thanos-io/thanos/pkg/store/labelpb"
 
 	"github.com/thanos-io/thanos/pkg/errutil"
 	"github.com/thanos-io/thanos/pkg/store/storepb/prompb"
@@ -61,13 +62,12 @@ func (r *Writer) Write(ctx context.Context, tenantID string, wreq *prompb.WriteR
 
 	var errs errutil.MultiError
 	for _, t := range wreq.Timeseries {
-		lset := make(labels.Labels, len(t.Labels))
-		for j := range t.Labels {
-			lset[j] = labels.Label{
-				Name:  t.Labels[j].Name,
-				Value: t.Labels[j].Value,
-			}
-		}
+		// Copy labels so we allocate memory only for labels, nothing else.
+		labelpb.ReAllocZLabelsStrings(&t.Labels)
+
+		// TODO(bwplotka): Use improvement https://github.com/prometheus/prometheus/pull/8600, so we do that only when
+		// we need it (when we store labels for longer).
+		lset := labelpb.ZLabelsToPromLabels(t.Labels)
 
 		// Append as many valid samples as possible, but keep track of the errors.
 		for _, s := range t.Samples {