GitHub - thanujadax/toposeg2d

Branches Tags

Name		Name	Last commit message	Last commit date
Latest commit History 160 Commits
3Dreconstruction		3Dreconstruction
RF		RF
candidates		candidates
createTrainingData		createTrainingData
evaluate		evaluate
figures		figures
sbmrm		sbmrm
ILPparamEst.m		ILPparamEst.m
README.txt		README.txt
adjustBorderLine.m		adjustBorderLine.m
angleSmoothness.m		angleSmoothness.m
appendPsuedoEdgeIDs2edges2pixels.m		appendPsuedoEdgeIDs2edges2pixels.m
batchRun.m		batchRun.m
batchRun_cremi.m		batchRun_cremi.m
batchRun_cremi_A.m		batchRun_cremi_A.m
batchRun_cremi_B.m		batchRun_cremi_B.m
batchRun_cremi_C.m		batchRun_cremi_C.m
batchRun_cremi_chunks.m		batchRun_cremi_chunks.m
batchRun_cremi_whole.m		batchRun_cremi_whole.m
batchRun_isbi12.m		batchRun_isbi12.m
batch_generate2Dcandidates.m		batch_generate2Dcandidates.m
calculateAvgAlpha.m		calculateAvgAlpha.m
checkEdgeUsage.m		checkEdgeUsage.m
checkIfCellIsInterior.m		checkIfCellIsInterior.m
combineBlocks2Image.m		combineBlocks2Image.m
cremi_jobs.sh		cremi_jobs.sh
debug_smallImg.m		debug_smallImg.m
doILP_param1.m		doILP_param1.m
doILP_w.m		doILP_w.m
doILP_w2.m		doILP_w2.m
doILP_w_dir.m		doILP_w_dir.m
doILPseg.m		doILPseg.m
edgeFeatures.m		edgeFeatures.m
fixEdgesBetweenMergedRegions.m		fixEdgesBetweenMergedRegions.m
forestEdgeProb.mat.old		forestEdgeProb.mat.old
forestEdgeProbV7.mat		forestEdgeProbV7.mat
get4nhAll.m		get4nhAll.m
get8Neighbors.m		get8Neighbors.m
get8NeighborsWithout4.m		get8NeighborsWithout4.m
getAdjacencyMat.m		getAdjacencyMat.m
getAllCellStates.m		getAllCellStates.m
getAngleDifferences.m		getAngleDifferences.m
getBackboneEdgeIDs.m		getBackboneEdgeIDs.m
getBlockPositionForCanvas.m		getBlockPositionForCanvas.m
getBoundaryEdgeIDs.m		getBoundaryEdgeIDs.m
getBoundaryEdges2_DEPRICATED.m		getBoundaryEdges2_DEPRICATED.m
getBoundaryEdges_DEPRICATED.m		getBoundaryEdges_DEPRICATED.m
getBoundaryJunctions.m		getBoundaryJunctions.m
getBoundaryPixelsForCell.m		getBoundaryPixelsForCell.m
getCellBorderComponents.m		getCellBorderComponents.m
getCellBorderPixels.m		getCellBorderPixels.m
getCellCentroid.m		getCellCentroid.m
getCellCentroidsAll.m		getCellCentroidsAll.m
getCellIdForRegionID.m		getCellIdForRegionID.m
getCellPriors_intensity.m		getCellPriors_intensity.m
getCellPriors_probability.m		getCellPriors_probability.m
getCellStateWrtEdge.m		getCellStateWrtEdge.m
getCellStatesForActiveEdge.m		getCellStatesForActiveEdge.m
getClosestPixel.m		getClosestPixel.m
getClusIndForNodeInd.m		getClusIndForNodeInd.m
getClusterNodesAndPsEdges.m		getClusterNodesAndPsEdges.m
getClusterPixInds.m		getClusterPixInds.m
getClusteredJunctions.m		getClusteredJunctions.m
getCommonEdgesForRegions.m		getCommonEdgesForRegions.m
getConstraints.m		getConstraints.m
getConstraintsQP_PE.m		getConstraintsQP_PE.m
getCorrectedWSregions.m		getCorrectedWSregions.m
getDirEdgeLIDsForRegion.m		getDirEdgeLIDsForRegion.m
getDirectedEdgeOnOffRegions.m		getDirectedEdgeOnOffRegions.m
getEdgeIDsAttachedToNode.m		getEdgeIDsAttachedToNode.m
getEdgeIDsFromPixels.m		getEdgeIDsFromPixels.m
getEdgeListIndForPixInds.m		getEdgeListIndForPixInds.m
getEdgeLoop.m		getEdgeLoop.m
getEdgePixForWsFace.m		getEdgePixForWsFace.m
getEdgePolarity.m		getEdgePolarity.m
getEdgePriors.m		getEdgePriors.m
getEdgeProbabilityFromMap.m		getEdgeProbabilityFromMap.m
getEdgeUnaryAbs.m		getEdgeUnaryAbs.m
getEdges2Pixels.m		getEdges2Pixels.m
getEdgesForAllNodeTypes.m		getEdgesForAllNodeTypes.m
getEdgesToIgnore.m		getEdgesToIgnore.m
getEqConstraints.m		getEqConstraints.m
getEqConstraints2.m		getEqConstraints2.m
getFaceAdjFromJnAdjGraph.m		getFaceAdjFromJnAdjGraph.m
getFaceAdjFromWS.m		getFaceAdjFromWS.m
getGraphFromWS.m		getGraphFromWS.m
getHoleRegionsInCell.m		getHoleRegionsInCell.m
getILPConstraints.m		getILPConstraints.m
getILPObjectiveVectorParametric.m		getILPObjectiveVectorParametric.m
getILPObjectiveVectorParametric2.m		getILPObjectiveVectorParametric2.m
getILPcoefficientVector.m		getILPcoefficientVector.m
getILPcoefficientVector2.m		getILPcoefficientVector2.m
getInEdges.m		getInEdges.m
getInNodePixels.m		getInNodePixels.m
getInfoAllNodeTypes.m		getInfoAllNodeTypes.m
getInitValues.m		getInitValues.m
getInternalPixForCell.m		getInternalPixForCell.m
getInternelPixelsFromBoundary.m		getInternelPixelsFromBoundary.m
getJunctionTypeListInds.m		getJunctionTypeListInds.m
getJunctionsForEdges.m		getJunctionsForEdges.m

Repository files navigation

Main file: doILP_w_dir.m.
Currently, the paths for input raw images, probability maps and output directory are set in the first few lines of this main file.

Directories needed to be in MATLAB path:
common
orientations
randomforest-matlab
sift