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| # -*- coding: utf-8 -*- | ||
| # | ||
| # | ||
| # TheVirtualBrain-Framework Package. This package holds all Data Management, and | ||
| # Web-UI helpful to run brain-simulations. To use it, you also need do download | ||
| # TheVirtualBrain-Scientific Package (for simulators). See content of the | ||
| # documentation-folder for more details. See also http://www.thevirtualbrain.org | ||
| # | ||
| # (c) 2012-2020, Baycrest Centre for Geriatric Care ("Baycrest") and others | ||
| # | ||
| # This program is free software: you can redistribute it and/or modify it under the | ||
| # terms of the GNU General Public License as published by the Free Software Foundation, | ||
| # either version 3 of the License, or (at your option) any later version. | ||
| # This program is distributed in the hope that it will be useful, but WITHOUT ANY | ||
| # WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A | ||
| # PARTICULAR PURPOSE. See the GNU General Public License for more details. | ||
| # You should have received a copy of the GNU General Public License along with this | ||
| # program. If not, see <http://www.gnu.org/licenses/>. | ||
| # | ||
| # | ||
| # CITATION: | ||
| # When using The Virtual Brain for scientific publications, please cite it as follows: | ||
| # | ||
| # Paula Sanz Leon, Stuart A. Knock, M. Marmaduke Woodman, Lia Domide, | ||
| # Jochen Mersmann, Anthony R. McIntosh, Viktor Jirsa (2013) | ||
| # The Virtual Brain: a simulator of primate brain network dynamics. | ||
| # Frontiers in Neuroinformatics (7:10. doi: 10.3389/fninf.2013.00010) | ||
| # | ||
| # | ||
|
|
||
| """ | ||
| This module the building of a cython wrapper around a C++ library for | ||
| calculating the geodesic distance between points on a mesh surface. | ||
| To build:: | ||
| python setup.py build_ext --inplace | ||
| .. moduleauthor:: Gaurav Malhotra <Gaurav@tvb.invalid> | ||
| .. moduleauthor:: Stuart A. Knock <Stuart@tvb.invalid> | ||
| """ | ||
|
|
||
| import os | ||
| import sys | ||
| import shutil | ||
| import setuptools | ||
|
|
||
| import numpy | ||
| from Cython.Distutils import build_ext | ||
|
|
||
| GEODESIC_NAME = "gdist" | ||
|
|
||
| GEODESIC_MODULE = [ | ||
| setuptools.Extension( | ||
| name=GEODESIC_NAME, # Name of extension | ||
| sources=["gdist.pyx"], # Filename of Cython source | ||
| language="c++", # Cython create C++ source | ||
| # Disable assertions; one is failing geodesic_mesh.h:405 | ||
| # define_macros=[('NDEBUG', 1)], | ||
| extra_compile_args=[ | ||
| '--std=c++14', | ||
| '-fopenmp' if sys.platform != 'win32' else '/openmp', | ||
| ], | ||
| extra_link_args=[ | ||
| '--std=c++14', | ||
| '-fopenmp' if sys.platform != 'win32' else '/openmp', | ||
| ], | ||
| include_dirs=[numpy.get_include(), "geodesic_library"], | ||
| ) | ||
| ] | ||
|
|
||
| INCLUDE_DIRS = [ | ||
| numpy.get_include(), # NumPy dtypes | ||
| "geodesic_library", # geodesic distance, C++ library. | ||
| ] | ||
|
|
||
| TEAM = "Danil Kirsanov, Gaurav Malhotra and Stuart Knock" | ||
|
|
||
| INSTALL_REQUIREMENTS = ['numpy', 'scipy', 'cython'] | ||
|
|
||
| with open(os.path.join(os.path.dirname(__file__), 'README.rst')) as fd: | ||
| DESCRIPTION = fd.read() | ||
|
|
||
| setuptools.setup( | ||
| name="tvb-" + GEODESIC_NAME, | ||
| version='2.1.0', | ||
| ext_modules=GEODESIC_MODULE, | ||
| include_dirs=INCLUDE_DIRS, | ||
| cmdclass={'build_ext': build_ext}, | ||
| install_requires=INSTALL_REQUIREMENTS, | ||
| description="Compute geodesic distances", | ||
| long_description=DESCRIPTION, | ||
| license='GPL v3', | ||
| author=TEAM, | ||
| author_email='tvb.admin@thevirtualbrain.org', | ||
| url='https://github.com/the-virtual-brain/tvb-gdist', | ||
| keywords="gdist geodesic distance geo tvb" | ||
| ) | ||
|
|
||
| shutil.rmtree('tvb_gdist.egg-info', True) | ||
| if os.path.exists(GEODESIC_NAME + '.cpp'): | ||
| os.remove(GEODESIC_NAME + '.cpp') | ||
| shutil.rmtree('build', True) | ||
| # -*- coding: utf-8 -*- | ||
| # | ||
| # | ||
| # TheVirtualBrain-Framework Package. This package holds all Data Management, and | ||
| # Web-UI helpful to run brain-simulations. To use it, you also need do download | ||
| # TheVirtualBrain-Scientific Package (for simulators). See content of the | ||
| # documentation-folder for more details. See also http://www.thevirtualbrain.org | ||
| # | ||
| # (c) 2012-2020, Baycrest Centre for Geriatric Care ("Baycrest") and others | ||
| # | ||
| # This program is free software: you can redistribute it and/or modify it under the | ||
| # terms of the GNU General Public License as published by the Free Software Foundation, | ||
| # either version 3 of the License, or (at your option) any later version. | ||
| # This program is distributed in the hope that it will be useful, but WITHOUT ANY | ||
| # WARRANTY; without even the implied warranty of MERCHANTABILITY or FITNESS FOR A | ||
| # PARTICULAR PURPOSE. See the GNU General Public License for more details. | ||
| # You should have received a copy of the GNU General Public License along with this | ||
| # program. If not, see <http://www.gnu.org/licenses/>. | ||
| # | ||
| # | ||
| # CITATION: | ||
| # When using The Virtual Brain for scientific publications, please cite it as follows: | ||
| # | ||
| # Paula Sanz Leon, Stuart A. Knock, M. Marmaduke Woodman, Lia Domide, | ||
| # Jochen Mersmann, Anthony R. McIntosh, Viktor Jirsa (2013) | ||
| # The Virtual Brain: a simulator of primate brain network dynamics. | ||
| # Frontiers in Neuroinformatics (7:10. doi: 10.3389/fninf.2013.00010) | ||
| # | ||
| # | ||
|
|
||
| """ | ||
| This module the building of a cython wrapper around a C++ library for | ||
| calculating the geodesic distance between points on a mesh surface. | ||
| To build:: | ||
| python setup.py build_ext --inplace | ||
| .. moduleauthor:: Gaurav Malhotra <Gaurav@tvb.invalid> | ||
| .. moduleauthor:: Stuart A. Knock <Stuart@tvb.invalid> | ||
| """ | ||
|
|
||
| import os | ||
| import sys | ||
| import shutil | ||
| import setuptools | ||
|
|
||
| import numpy | ||
| from Cython.Distutils import build_ext | ||
|
|
||
| GEODESIC_NAME = "gdist" | ||
|
|
||
| GEODESIC_MODULE = [ | ||
| setuptools.Extension( | ||
| name=GEODESIC_NAME, # Name of extension | ||
| sources=["gdist.pyx"], # Filename of Cython source | ||
| language="c++", # Cython create C++ source | ||
| # Disable assertions; one is failing geodesic_mesh.h:405 | ||
| # define_macros=[('NDEBUG', 1)], | ||
| extra_compile_args=[ | ||
| '--std=c++14', | ||
| '-fopenmp' if sys.platform != 'win32' else '/openmp', | ||
| ], | ||
| extra_link_args=[ | ||
| '--std=c++14', | ||
| '-fopenmp' if sys.platform != 'win32' else '/openmp', | ||
| ], | ||
| include_dirs=[numpy.get_include(), "geodesic_library"], | ||
| ) | ||
| ] | ||
|
|
||
| INCLUDE_DIRS = [ | ||
| numpy.get_include(), # NumPy dtypes | ||
| "geodesic_library", # geodesic distance, C++ library. | ||
| ] | ||
|
|
||
| TEAM = "Danil Kirsanov, Gaurav Malhotra and Stuart Knock" | ||
|
|
||
| INSTALL_REQUIREMENTS = ['numpy', 'scipy', 'cython'] | ||
|
|
||
| with open(os.path.join(os.path.dirname(__file__), 'README.rst')) as fd: | ||
| DESCRIPTION = fd.read() | ||
|
|
||
| setuptools.setup( | ||
| name="tvb-" + GEODESIC_NAME, | ||
| version='2.1.0', | ||
| ext_modules=GEODESIC_MODULE, | ||
| include_dirs=INCLUDE_DIRS, | ||
| cmdclass={'build_ext': build_ext}, | ||
| install_requires=INSTALL_REQUIREMENTS, | ||
| description="Compute geodesic distances", | ||
| long_description=DESCRIPTION, | ||
| license='GPL v3', | ||
| author=TEAM, | ||
| author_email='tvb.admin@thevirtualbrain.org', | ||
| url='https://github.com/the-virtual-brain/tvb-gdist', | ||
| keywords="gdist geodesic distance geo tvb" | ||
| ) | ||
|
|
||
| shutil.rmtree('tvb_gdist.egg-info', True) | ||
| if os.path.exists(GEODESIC_NAME + '.cpp'): | ||
| os.remove(GEODESIC_NAME + '.cpp') | ||
| shutil.rmtree('build', True) |