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  1. chewBBACA_schemas chewBBACA_schemas Public

    wgMLST schemas formatted for chewBBACA for food-borne pathogens

    2

  2. INNUENDO INNUENDO Public

    Forked from B-UMMI/INNUENDO

    Python 1

  3. patho_typing patho_typing Public

    Forked from B-UMMI/patho_typing

    In silico pathogenic typing directly from raw Illumina reads

    Python

  4. chewBBACA chewBBACA Public

    Forked from B-UMMI/chewBBACA

    BSR-Based Allele Calling Algorithm

    Python 1

  5. getSeqENA getSeqENA Public

    Forked from B-UMMI/getSeqENA

    Get fastq files from ENA using Run IDs

    Python

  6. INNUca INNUca Public

    Forked from B-UMMI/INNUca

    INNUENDO quality control of reads, de novo assembly and contigs quality assessment, and possible contamination search

    Python 1