PANGEA South Africa HIV Model

This repository contains the research compendium organized as an R package for Nascimento et al. 2020. Here you can find all scripts used in our paper.

Please contact PANGEA to get permission to use the data (genomic sequences, metadata and phylogenetic trees)

For details of analyses carried out on our manuscript, check the wiki.

Authors

Fabricia F. Nascimento (thednainus@yahoo.com)

Erik M. Volz (e.volz@imperial.ac.uk)

How to install it?

devtools::install_github(repo = "thednainus/pangeaZA")

# After installing the package:
library(pangeaZA)