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Error in running dca #22

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nhuhoa opened this issue Feb 26, 2019 · 1 comment
Closed

Error in running dca #22

nhuhoa opened this issue Feb 26, 2019 · 1 comment

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@nhuhoa
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nhuhoa commented Feb 26, 2019

Dear Gökçen,

I have installed dca using anaconda but when I try to run dca, there is a problem of import keras from dca.
Anaconda installation of dca:
conda install -c bioconda dca
All setup conditions are the same as setup.py file. I use jupyter notebook and check the version of packages:
scanpy==1.4 anndata==0.6.18 numpy==1.15.4 scipy==1.2.1 pandas==0.24.1 scikit-learn==0.20.2 statsmodels==0.9.0 python-igraph==0.7.1 louvain==0.6.1
keras== 2.0.8, six== 1.12.0, h5py== 2.9.0, kopt== 0.1.0

I can work with scanpy without any problem. However, when I import dca in Jupyter server using:
from dca.api import dca
they throw an error like this:

from keras.engine.base_layer import InputSpecModuleNotFoundError: No module named 'keras.engine.base_layer'

Have you ever met this case? Do you have any suggestions?
Thanks a lot and nice day,

Best,
Hoa Tran

_

@gokceneraslan
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Should be fixed in the latest release.

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