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@theislab

Theis Lab

Institute of Computational Biology

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  1. single-cell-tutorial single-cell-tutorial Public

    Single cell current best practices tutorial case study for the paper:Luecken and Theis, "Current best practices in single-cell RNA-seq analysis: a tutorial"

    Jupyter Notebook 1.4k 451

  2. single-cell-best-practices single-cell-best-practices Public

    https://www.sc-best-practices.org

    Jupyter Notebook 736 173

  3. scvelo scvelo Public

    RNA Velocity generalized through dynamical modeling

    Python 410 102

  4. scarches scarches Public

    Reference mapping for single-cell genomics

    Jupyter Notebook 327 51

  5. cellrank cellrank Public

    CellRank: dynamics from multi-view single-cell data

    Python 342 47

  6. scib scib Public

    Benchmarking analysis of data integration tools

    Python 291 62

Repositories

Showing 10 of 210 repositories
  • ehrapy Public

    Electronic Health Record Analysis with Python.

    theislab/ehrapy’s past year of commit activity
    Python 171 Apache-2.0 18 39 3 Updated Sep 18, 2024
  • pertpy-reproducibility Public
    theislab/pertpy-reproducibility’s past year of commit activity
    Jupyter Notebook 0 Apache-2.0 0 0 0 Updated Sep 18, 2024
  • CFGen Public
    theislab/CFGen’s past year of commit activity
    Python 4 MIT 3 1 0 Updated Sep 18, 2024
  • gh-dashboard Public

    A dashboard of everything in the theislab GitHub repository

    theislab/gh-dashboard’s past year of commit activity
    HTML 1 0 0 0 Updated Sep 18, 2024
  • anndata2ri Public

    Convert between AnnData and SingleCellExperiment

    theislab/anndata2ri’s past year of commit activity
    Python 124 GPL-3.0 16 13 0 Updated Sep 17, 2024
  • scanpydoc Public

    Collection of Sphinx extensions similar to (but more flexible than) numpydoc

    theislab/scanpydoc’s past year of commit activity
    Python 12 GPL-3.0 6 3 0 Updated Sep 17, 2024
  • quasiSCVI Public

    Extending the likelihood to quasi-likelihood

    theislab/quasiSCVI’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Sep 16, 2024
  • moscot Public

    Multi-omic single-cell optimal transport tools

    theislab/moscot’s past year of commit activity
    Python 109 BSD-3-Clause 9 45 4 Updated Sep 16, 2024
  • ehrdata Public

    A datastructure for EHR data

    theislab/ehrdata’s past year of commit activity
    Jupyter Notebook 5 Apache-2.0 1 0 2 Updated Sep 16, 2024
  • cellrank Public

    CellRank: dynamics from multi-view single-cell data

    theislab/cellrank’s past year of commit activity
    Python 342 BSD-3-Clause 47 18 0 Updated Sep 15, 2024
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