Pinned

1. single-cell-tutorial Public

   Single cell current best practices tutorial case study for the paper:Luecken and Theis, "Current best practices in single-cell RNA-seq analysis: a tutorial"

   Jupyter Notebook 1.2k 419

2. single-cell-best-practices Public

   https://www.sc-best-practices.org

   Jupyter Notebook 489 94

3. scvelo Public

   RNA Velocity generalized through dynamical modeling

   Python 357 95

4. scarches Public

   Reference mapping for single-cell genomics

   Jupyter Notebook 277 44

5. cellrank Public

   CellRank: dynamics from multi-view single-cell data. See the docs:

   Python 256 33

6. scib Public

   Benchmarking analysis of data integration tools

   Python 235 47