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user.rst
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user.rst
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User API
########
Import :mod:`moscot` as::
import moscot as mt
Biological Problems
~~~~~~~~~~~~~~~~~~~
.. module:: moscot.problems
.. currentmodule:: moscot.problems
.. autosummary::
:toctree: genapi
time.TemporalProblem
time.LineageProblem
space.AlignmentProblem
space.MappingProblem
spatiotemporal.SpatioTemporalProblem
cross_modality.TranslationProblem
Generic Problems
~~~~~~~~~~~~~~~~
.. autosummary::
:toctree: genapi
generic.SinkhornProblem
generic.GWProblem
generic.FGWProblem
Plotting
~~~~~~~~
.. module:: moscot.plotting
.. currentmodule:: moscot
.. autosummary::
:toctree: genapi
plotting.cell_transition
plotting.sankey
plotting.push
plotting.pull
Datasets
~~~~~~~~
.. module:: moscot.datasets
.. currentmodule:: moscot
.. autosummary::
:toctree: genapi
datasets.bone_marrow
datasets.c_elegans
datasets.drosophila
datasets.hspc
datasets.mosta
datasets.sciplex
datasets.sim_align
datasets.simulate_data
datasets.tedsim
datasets.zebrafish