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Add some data access helpers to utils #619

Merged
merged 15 commits into from Jun 24, 2019
Merged

Add some data access helpers to utils #619

merged 15 commits into from Jun 24, 2019

Commits on Jun 24, 2019

  1. First draft of plotting helper funcs

    @ivirshup
    ivirshup committed Jun 24, 2019
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  2. Added obsm_keys arg and docs to obs_values_df

    @ivirshup
    ivirshup committed Jun 24, 2019
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  3. Update rank_genes_groups_df docs

    @ivirshup
    ivirshup committed Jun 24, 2019
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  4. Update rank_genes_group_df and test it

    @ivirshup
    ivirshup committed Jun 24, 2019
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  5. Update rank_genes_groups_df and obs_values_df docs.

    @ivirshup
    ivirshup committed Jun 24, 2019
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  6. Switch out obs_values for adata._get_obs_array

    @ivirshup
    ivirshup committed Jun 24, 2019
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  7. Changed logfc to log2fc

    @ivirshup
    ivirshup committed Jun 24, 2019
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  8. Update obs_values_df 

    * Now uses `AnnData.obs_vector`
    * Bump required version of AnnData to `0.6.21` to allow this
* No longer supports raw
    @ivirshup
    ivirshup committed Jun 24, 2019
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  9. Update obs_values_df tests

    @ivirshup
    ivirshup committed Jun 24, 2019
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  10. Minor fixup and formatting

    @ivirshup
    ivirshup committed Jun 24, 2019
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  11. Rename to obs_df, add var_df

    @ivirshup
    ivirshup committed Jun 24, 2019
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  12. Improve support for array-likes in obs_df and var_df

    @ivirshup
    ivirshup committed Jun 24, 2019
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  13. Moved data accesors to new module sc.get 

    Based on discussion from in: scverse#562
    @ivirshup
    ivirshup committed Jun 24, 2019
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  14. Update docs for sc.get

    @ivirshup
    ivirshup committed Jun 24, 2019
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  15. Update release notes for sc.get

    @ivirshup
    ivirshup committed Jun 24, 2019
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