/
hlca.yml
213 lines (213 loc) · 6.1 KB
/
hlca.yml
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
name: hlca
channels:
- conda-forge
- defaults
dependencies:
- _libgcc_mutex=0.1=main
- _openmp_mutex=5.1=1_gnu
- anyio=3.6.2=pyhd8ed1ab_0
- argon2-cffi=21.3.0=pyhd8ed1ab_0
- argon2-cffi-bindings=21.2.0=py310h5764c6d_2
- asttokens=2.2.1=pyhd8ed1ab_0
- attrs=22.2.0=pyh71513ae_0
- babel=2.12.1=pyhd8ed1ab_1
- backcall=0.2.0=pyh9f0ad1d_0
- backports=1.0=pyhd8ed1ab_3
- backports.functools_lru_cache=1.6.4=pyhd8ed1ab_0
- beautifulsoup4=4.11.2=pyha770c72_0
- bleach=6.0.0=pyhd8ed1ab_0
- brotlipy=0.7.0=py310h5764c6d_1004
- bzip2=1.0.8=h7b6447c_0
- ca-certificates=2022.12.7=ha878542_0
- certifi=2022.12.7=pyhd8ed1ab_0
- cffi=1.15.0=py310h0fdd8cc_0
- cryptography=3.4.8=py310h685ca39_1
- debugpy=1.5.1=py310h295c915_0
- decorator=5.1.1=pyhd8ed1ab_0
- defusedxml=0.7.1=pyhd8ed1ab_0
- entrypoints=0.4=pyhd8ed1ab_0
- executing=1.2.0=pyhd8ed1ab_0
- flit-core=3.8.0=pyhd8ed1ab_0
- idna=3.4=pyhd8ed1ab_0
- importlib-metadata=6.0.0=pyha770c72_0
- importlib_resources=5.12.0=pyhd8ed1ab_0
- ipykernel=6.15.0=pyh210e3f2_0
- ipython=8.11.0=pyh41d4057_0
- ipython_genutils=0.2.0=py_1
- jedi=0.18.2=pyhd8ed1ab_0
- jinja2=3.1.2=pyhd8ed1ab_1
- json5=0.9.5=pyh9f0ad1d_0
- jsonschema=4.17.3=pyhd8ed1ab_0
- jupyter_client=7.3.4=pyhd8ed1ab_0
- jupyter_core=5.2.0=py310hff52083_0
- jupyter_server=1.23.6=pyhd8ed1ab_0
- jupyterlab=3.5.0=pyhd8ed1ab_0
- jupyterlab_pygments=0.2.2=pyhd8ed1ab_0
- jupyterlab_server=2.20.0=pyhd8ed1ab_0
- ld_impl_linux-64=2.38=h1181459_1
- libffi=3.4.2=h6a678d5_6
- libgcc-ng=11.2.0=h1234567_1
- libgomp=11.2.0=h1234567_1
- libsodium=1.0.18=h36c2ea0_1
- libstdcxx-ng=11.2.0=h1234567_1
- libuuid=1.41.5=h5eee18b_0
- markupsafe=2.1.1=py310h7f8727e_0
- matplotlib-inline=0.1.6=pyhd8ed1ab_0
- mistune=2.0.5=pyhd8ed1ab_0
- nbclassic=0.5.3=pyh8b2e9e2_2
- nbclient=0.7.2=pyhd8ed1ab_0
- nbconvert-core=7.2.9=pyhd8ed1ab_0
- nbformat=5.7.3=pyhd8ed1ab_0
- ncurses=6.4=h6a678d5_0
- nest-asyncio=1.5.6=pyhd8ed1ab_0
- notebook=6.5.3=pyha770c72_0
- notebook-shim=0.2.2=pyhd8ed1ab_0
- openssl=1.1.1t=h7f8727e_0
- packaging=23.0=pyhd8ed1ab_0
- pandocfilters=1.5.0=pyhd8ed1ab_0
- parso=0.8.3=pyhd8ed1ab_0
- pexpect=4.8.0=pyh1a96a4e_2
- pickleshare=0.7.5=py_1003
- pip=23.0.1=py310h06a4308_0
- pkgutil-resolve-name=1.3.10=pyhd8ed1ab_0
- platformdirs=3.1.1=pyhd8ed1ab_0
- prometheus_client=0.16.0=pyhd8ed1ab_0
- prompt-toolkit=3.0.38=pyha770c72_0
- prompt_toolkit=3.0.38=hd8ed1ab_0
- psutil=5.9.0=py310h5eee18b_0
- ptyprocess=0.7.0=pyhd3deb0d_0
- pure_eval=0.2.2=pyhd8ed1ab_0
- pycparser=2.21=pyhd8ed1ab_0
- pygments=2.14.0=pyhd8ed1ab_0
- pyopenssl=20.0.1=pyhd8ed1ab_0
- pyrsistent=0.18.0=py310h7f8727e_0
- pysocks=1.7.1=pyha2e5f31_6
- python=3.10.9=h7a1cb2a_2
- python-dateutil=2.8.2=pyhd8ed1ab_0
- python-fastjsonschema=2.16.3=pyhd8ed1ab_0
- python_abi=3.10=2_cp310
- pytz=2022.7.1=pyhd8ed1ab_0
- pyzmq=23.2.0=py310h6a678d5_0
- readline=8.2=h5eee18b_0
- requests=2.28.2=pyhd8ed1ab_0
- send2trash=1.8.0=pyhd8ed1ab_0
- setuptools=65.6.3=py310h06a4308_0
- six=1.16.0=pyh6c4a22f_0
- sniffio=1.3.0=pyhd8ed1ab_0
- sqlite=3.40.1=h5082296_0
- stack_data=0.6.2=pyhd8ed1ab_0
- terminado=0.17.1=pyh41d4057_0
- tinycss2=1.2.1=pyhd8ed1ab_0
- tk=8.6.12=h1ccaba5_0
- tomli=2.0.1=pyhd8ed1ab_0
- tornado=6.1=py310h5764c6d_3
- traitlets=5.9.0=pyhd8ed1ab_0
- typing-extensions=4.5.0=hd8ed1ab_0
- typing_extensions=4.5.0=pyha770c72_0
- tzdata=2022g=h04d1e81_0
- urllib3=1.26.15=pyhd8ed1ab_0
- wcwidth=0.2.6=pyhd8ed1ab_0
- webencodings=0.5.1=py_1
- websocket-client=1.5.1=pyhd8ed1ab_0
- wheel=0.38.4=py310h06a4308_0
- xz=5.2.10=h5eee18b_1
- zeromq=4.3.4=h9c3ff4c_1
- zipp=3.15.0=pyhd8ed1ab_0
- zlib=1.2.13=h5eee18b_0
- pip:
- absl-py==1.4.0
- aiohttp==3.8.4
- aiosignal==1.3.1
- anndata==0.8.0
- async-timeout==4.0.2
- cached-property==1.5.2
- charset-normalizer==3.1.0
- chex==0.1.6
- contextlib2==21.6.0
- contourpy==1.0.7
- cuda-python==12.1.0
- cycler==0.11.0
- cython==0.29.33
- dm-tree==0.1.8
- docrep==0.3.2
- et-xmlfile==1.1.0
- etils==1.0.0
- exceptiongroup==1.1.1
- execnet==1.9.0
- filelock==3.9.0
- flax==0.6.7
- fonttools==4.39.0
- frozenlist==1.3.3
- fsspec==2023.3.0
- gdown==4.6.4
- h5py==3.8.0
- igraph==0.10.4
- iniconfig==2.0.0
- jax==0.4.6
- jaxlib==0.4.6
- joblib==1.2.0
- kiwisolver==1.4.4
- leidenalg==0.9.1
- lightning-utilities==0.8.0
- llvmlite==0.39.1
- markdown-it-py==2.2.0
- matplotlib==3.7.1
- mdurl==0.1.2
- ml-collections==0.1.1
- mock==5.0.1
- msgpack==1.0.5
- mudata==0.2.1
- multidict==6.0.4
- multipledispatch==0.6.0
- muon==0.1.3
- natsort==8.3.1
- networkx==3.0
- newick==1.0.0
- numba==0.56.4
- numpy==1.23.5
- numpyro==0.11.0
- nvidia-cublas-cu11==11.10.3.66
- nvidia-cuda-nvrtc-cu11==11.7.99
- nvidia-cuda-runtime-cu11==11.7.99
- nvidia-cudnn-cu11==8.5.0.96
- openpyxl==3.1.2
- opt-einsum==3.3.0
- optax==0.1.4
- orbax==0.1.3
- pandas==1.5.3
- path==16.6.0
- path-py==12.5.0
- patsy==0.5.3
- pillow==9.4.0
- pluggy==1.0.0
- protobuf==4.22.1
- pynndescent==0.5.8
- pyparsing==3.0.9
- pyro-api==0.1.2
- pyro-ppl==1.8.4
- pytest==7.2.2
- pytest-shutil==1.7.0
- pytorch-lightning==1.9.4
- pyyaml==6.0
- rich==13.3.2
- scanpy==1.9.3
- schpl==1.0.2
- scikit-learn==1.1.3
- scipy==1.10.1
- scvi-tools==0.20.2
- seaborn==0.12.2
- session-info==1.0.0
- soupsieve==2.4
- statsmodels==0.13.5
- stdlib-list==0.8.0
- tensorstore==0.1.33
- termcolor==2.2.0
- texttable==1.6.7
- threadpoolctl==3.1.0
- toolz==0.12.0
- torch==1.13.1
- torchmetrics==0.11.4
- tqdm==4.65.0
- umap-learn==0.5.3
- yarl==1.8.2
prefix: /home/icb/aleksandra.topalova/miniconda3/envs/hlca