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scPoli get latent representations #170

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melancholy12 opened this issue Feb 8, 2023 · 2 comments
Closed

scPoli get latent representations #170

melancholy12 opened this issue Feb 8, 2023 · 2 comments

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@melancholy12
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I used 10-30 latent when I run scvi model. Where can I set the latent representations when I use the scPoli?
Thanks!
@cdedonno
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cdedonno commented Feb 8, 2023

Hi @melancholy12, please refer to the documentation. The parameter you're looking for is latent_dim.

@cdedonno cdedonno closed this as completed Feb 8, 2023
@melancholy12
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Hi @cdedonno ,I only used scPoli for reference mapping. Can I only use it for data integration rather than mapping? For example, the single cell RNA seq data have a lot of components. I just want to do the data integration.

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@cdedonno @melancholy12