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Thiago Mosqueiro edited this page Sep 7, 2015 · 22 revisions

This is a complimentary wiki, associated with our repository modeliGEM, for iGEM competition. Visit our iGEM page here! Here you will find information about our material and the core software we have developed to simulate our synthetic system. All of our code is completely free, as in free beer and as in free will. You can find our source files here.

Below, we present a comprehensive guide through our material and code. Our main idea is to spread further several techniques on modeling and simulations for synthetic biology. If you have any comments, suggestions or critics, please do not hesitate contacting us. Let this community grow stronger!

For more information on our Team: https://www.facebook.com/brasilusp

For users

Need help with Python?

Python for Synthetic Biology

  • Data analysis - We will fit some data using scipy and scikit-learn.
  • Deterministic Modeling - Using dynamical systems, we model and numerically solve gene expression.
  • Stochastic modeling
  • Cell populations modeling

Interlab Studies

Bioinformatics

Our software

  • Main documentation
  • Example

References

If you are looking for good references on how to model biological systems, especially for synthetic biology, we have a list of papers and books that helped us during our learning.


Home

Introduction
Our methodology Anaconda Tutorial (Windows)
Python Introduction
References

Fundamentals
Data analysis
Deterministic Modeling
Stochastic modeling
Cell populations modeling

Our software
Main documentation
Example

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