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setup.py
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setup.py
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#!/usr/bin/env python
# emacs: -*- mode: python; py-indent-offset: 4; indent-tabs-mode: nil -*-
# vi: set ft=python sts=4 ts=4 sw=4 et:
### ### ### ### ### ### ### ### ### ### ### ### ### ### ### ### ### ### ### ##
#
# See COPYING file distributed along with the PyMVPA package for the
# copyright and license terms.
#
### ### ### ### ### ### ### ### ### ### ### ### ### ### ### ### ### ### ### ##
"""Python distutils setup for PyMVPA"""
from numpy.distutils.core import setup, Extension
import os
import sys
from glob import glob
if sys.version_info[:2] < (2, 6):
raise RuntimeError("PyMVPA requires Python 2.6 or higher")
# some config settings
bind_libsvm = 'local' # choices: 'local', 'system', None
libsvmc_extra_sources = []
libsvmc_include_dirs = []
libsvmc_libraries = []
extra_link_args = []
libsvmc_library_dirs = []
# platform-specific settings
if sys.platform == "darwin":
extra_link_args.append("-bundle")
if sys.platform.startswith('linux'):
# need to look for numpy (header location changes with v1.3)
from numpy.distutils.misc_util import get_numpy_include_dirs
libsvmc_include_dirs += get_numpy_include_dirs()
# when libsvm is forced -- before it was used only in cases
# when libsvm was available at system level, hence we switch
# from local to system at this point
# TODO: Deprecate --with-libsvm for 0.5
for arg in ('--with-libsvm', '--with-system-libsvm'):
if not sys.argv.count(arg):
continue
# clean argv if necessary (or distutils will complain)
sys.argv.remove(arg)
# assure since default is 'auto' wouldn't fail if it is N/A
bind_libsvm = 'system'
# when no libsvm bindings are requested explicitly
if sys.argv.count('--no-libsvm'):
# clean argv if necessary (or distutils will complain)
sys.argv.remove('--no-libsvm')
bind_libsvm = None
# if requested:
if bind_libsvm == 'local':
# we will provide libsvm sources later on # if libsvm.a is available locally -- use it
#if os.path.exists(os.path.join('build', 'libsvm', 'libsvm.a')):
libsvm_3rd_path = os.path.join('3rd', 'libsvm')
libsvmc_include_dirs += [libsvm_3rd_path]
libsvmc_extra_sources = [os.path.join(libsvm_3rd_path, 'svm.cpp')]
elif bind_libsvm == 'system':
# look for libsvm in some places, when local one is not used
libsvmc_libraries += ['svm']
if not sys.platform.startswith('win'):
libsvmc_include_dirs += [
'/usr/include/libsvm-3.0/libsvm',
'/usr/include/libsvm-2.0/libsvm',
'/usr/include/libsvm',
'/usr/local/include/libsvm',
'/usr/local/include/libsvm-2.0/libsvm',
'/usr/local/include']
else:
# no clue on windows
pass
elif bind_libsvm is None:
pass
else:
raise ValueError("Shouldn't happen that we get bind_libsvm=%r"
% (bind_libsvm,))
# define the extension modules
libsvmc_ext = Extension(
'mvpa2.clfs.libsvmc._svmc',
sources=libsvmc_extra_sources + ['mvpa2/clfs/libsvmc/svmc.i'],
include_dirs=libsvmc_include_dirs,
library_dirs=libsvmc_library_dirs,
libraries=libsvmc_libraries,
language='c++',
extra_link_args=extra_link_args,
swig_opts=['-I' + d for d in libsvmc_include_dirs])
smlrc_ext = Extension(
'mvpa2.clfs.libsmlrc.smlrc',
sources=[ 'mvpa2/clfs/libsmlrc/smlr.c' ],
#library_dirs = library_dirs,
libraries=['m'] if not sys.platform.startswith('win') else [],
# extra_compile_args = ['-O0'],
extra_link_args=extra_link_args,
language='c')
ext_modules = [smlrc_ext]
if bind_libsvm:
ext_modules.append(libsvmc_ext)
# Notes on the setup
# Version scheme is: major.minor.patch<suffix>
# define the setup
def setup_package():
# Perform 2to3 if needed
local_path = os.path.dirname(os.path.abspath(sys.argv[0]))
src_path = local_path
if sys.version_info[0] == 3:
src_path = os.path.join(local_path, 'build', 'py3k')
import py3tool
print("Converting to Python3 via 2to3...")
py3tool.sync_2to3('mvpa2', os.path.join(src_path, 'mvpa2'))
py3tool.sync_2to3('3rd', os.path.join(src_path, '3rd'))
# Run build
os.chdir(src_path)
sys.path.insert(0, src_path)
setup(name='pymvpa2',
version='2.2.0',
author='Michael Hanke, Yaroslav Halchenko, Per B. Sederberg',
author_email='pkg-exppsy-pymvpa@lists.alioth.debian.org',
license='MIT License',
url='http://www.pymvpa.org',
description='Multivariate pattern analysis',
long_description=\
"PyMVPA is a Python module intended to ease pattern classification " \
"analyses of large datasets. It provides high-level abstraction of " \
"typical processing steps and a number of implementations of some " \
"popular algorithms. While it is not limited to neuroimaging data " \
"it is eminently suited for such datasets.\n" \
"PyMVPA is truly free software (in every respect) and " \
"additionally requires nothing but free-software to run.",
# please maintain alphanumeric order
packages=[ 'mvpa2',
'mvpa2.algorithms',
'mvpa2.atlases',
'mvpa2.base',
'mvpa2.clfs',
'mvpa2.clfs.libsmlrc',
'mvpa2.clfs.libsvmc',
'mvpa2.clfs.skl',
'mvpa2.clfs.sg',
'mvpa2.datasets',
'mvpa2.datasets.sources',
'mvpa2.featsel',
'mvpa2.kernels',
'mvpa2.mappers',
'mvpa2.generators',
'mvpa2.measures',
'mvpa2.misc',
'mvpa2.misc.bv',
'mvpa2.misc.fsl',
'mvpa2.misc.io',
'mvpa2.misc.plot',
'mvpa2.misc.surfing',
'mvpa2.sandbox',
'mvpa2.support',
'mvpa2.support.afni',
'mvpa2.support.bayes',
'mvpa2.support.nipy',
'mvpa2.support.ipython',
'mvpa2.support.nibabel',
'mvpa2.testing',
'mvpa2.tests',
'mvpa2.tests.badexternals',
'mvpa2.viz',
],
data_files=[('mvpa2', ['mvpa2/COMMIT_HASH']),
('mvpa2/data',
[f for f in glob(os.path.join('mvpa2', 'data', '*'))
if os.path.isfile(f)]),
('mvpa2/data/bv',
[f for f in glob(os.path.join('mvpa2', 'data', 'bv', '*'))
if os.path.isfile(f)])],
scripts=glob(os.path.join('bin', '*')),
ext_modules=ext_modules
)
if __name__ == '__main__':
setup_package()