Only open channel 3

Ics_Opener.java → Ics_Opener_To_Tiff.java

@@ -18,7 +18,7 @@ some ics files.  If so, please send me a (small) examples
 	Author: Nico Stuurman <nico@cmp.ucsf.edu>
 	Modified by Wayne Rashband (wsr)
 */
-public class Ics_Opener implements PlugIn {
+public class Ics_Opener_To_Tiff implements PlugIn {
 
 	private static String defaultDirectory = null;
    boolean interlaced = false;
@@ -37,8 +37,9 @@ public void run(String arg) {
    }        
 
    private void showAbout() {
-      IJ.showMessage("Ics_Opener", "This plugins opens Ics/Ids files.  \n" +
-            "   Nico Stuurman, January 2007"
+      IJ.showMessage("Ics_Opener_To_Tiff", "This plugins opens Ics/Ids files and converts channel 3 to Tiff \n" +
+            "   Nico Stuurman, January 2007\n" + 
+				"   Thomas Miedema (thomasmiedema@gmail.com), March 2011"
             );
    }
 
@@ -410,7 +411,7 @@ public void OpenIcs () {
                impNew.getProcessor().resetMinAndMax();
                impNew.show();
             } else {  // less than MAX_CHANNELS channels
-               for (int ch=0; ch < nChannels; ch++) { 
+               for (int ch=2; ch < nChannels; ch++) { 
                   Integer chCount=new Integer(ch+1);
                   FileOpener fo=new FileOpener(fi[ch]);
                   ImageStack stackNew = new ImageStack(width, height,fo.createColorModel(fi[ch]));
@@ -430,3 +431,4 @@ public void OpenIcs () {
 
 	}
 }
+// vim: ts=3

make

@@ -0,0 +1,3 @@
+
+javac -classpath ../imagej-1.44c/ Ics_Opener_To_Tiff.java
+jar cvfM Ics_Opener_To_Tiff.jar *

plugins.config

@@ -1,10 +1,10 @@
-# Name: IicsOpener
-# Author: Nico Stuurman
-# Version: 0.2
-# Date: 2007/01/03
+# Name: IicsOpenerToTiff
+# Author: Thomas Miedema
+# Version: 0.2.1
+# Date: 2011/03/15
 # Requires: ImageJ 1.31s
-# Generate the jar file using: "jar cvfM Ics_Opener.jar *"
+# Generate the jar file using: "jar cvfM Ics_Opener_To_Tiff.jar *"
 
-File>Import, "ICS/IDS...", Ics_Opener("open")
-Plugins>InputOutput, "ICS/IDS... ", Ics_Opener("open")
-Help>About Plugins, "ICS/IDS...  ", Ics_Opener("about")
+File>Import, "ICS/IDS channel 3 to TIFF", Ics_Opener_To_Tiff("open")
+Plugins>InputOutput, "ICS/IDS channel 3 to TIFF ", Ics_Opener_To_Tiff("open")
+Help>About Plugins, "ICS/IDS channel 3 to TIFF  ", Ics_Opener_To_Tiff("about")