Home

This page provides some technical information for developers. More details about the code, the commandline interface and the cytoscape plugin can be found in the 3 manuals located in the root directory of the git repository.

Eclipse installation from git source

• Install:
  • java (1.6 or above)
  • eclipse (e.g. version Luna)
  • maven (comes packaged with Luna)
  • the m2e plugin in eclipse (from eclipse marktplace in Help menu: "Maven integration for Eclipse")
• Clone git URL
• Eclipse - Window - Open perspective - GIT - clone GIT repo - to git home dir
• Git perspective - Working directory - select 'diffany' - import project as general project
• Java perspective - select project - configure - convert to maven project

Then perform Run - Run as - Maven install, which will download all necessary Maven resources, perform the JUnit tests and build the jar file in the 'target' directory.

Run Maven build in Cytoscape (Windows)

• Cytoscape.bat
• install mvn:be.svlandeg/diffany/0.0.1-SNAPSHOT
  • e.g. -> "Bundle 1D:342"
• start 342

Tutorials

• Cytoscape 3 API
• Cytoscape 3: Tutorials
• Cytoscape 3: Architecture
• App from Maven Archetype in Eclipse
• Building OSGI bundles with Maven