-
Notifications
You must be signed in to change notification settings - Fork 10
/
pyproject.toml
172 lines (157 loc) · 4.93 KB
/
pyproject.toml
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
# https://peps.python.org/pep-0517/
[build-system]
requires = ["hatchling", "hatch-vcs"]
build-backend = "hatchling.build"
[tool.hatch.version]
source = "vcs"
[tool.hatch.build.targets.wheel]
packages = ["src/napari_omero", "src/omero/plugins"]
# https://peps.python.org/pep-0621/
[project]
name = "napari-omero"
dynamic = ["version"]
description = "napari/OMERO interoperability"
readme = "README.md"
requires-python = ">=3.7"
license = { text = "GPL-2.0-or-later" }
authors = [
{ name = "Talley Lambert", email = "talley.lambert@gmail.com" },
{ name = "Will Moore" },
]
keywords = ["OMERO.CLI", "plugin", "napari", "napari-plugin"]
classifiers = [
"Development Status :: 3 - Alpha",
"Environment :: X11 Applications :: Qt",
"Framework :: napari",
"Intended Audience :: Developers",
"Intended Audience :: Education",
"Intended Audience :: End Users/Desktop",
"Intended Audience :: Science/Research",
"License :: OSI Approved :: GNU General Public License v2 or later (GPLv2+)",
"Natural Language :: English",
"Operating System :: OS Independent",
"Programming Language :: Python :: 3.10",
"Programming Language :: Python :: 3.11",
"Programming Language :: Python :: 3.7",
"Programming Language :: Python :: 3.8",
"Programming Language :: Python :: 3.9",
"Programming Language :: Python :: 3",
"Topic :: Scientific/Engineering :: Bio-Informatics",
"Topic :: Scientific/Engineering :: Information Analysis",
"Topic :: Scientific/Engineering :: Visualization",
"Topic :: Scientific/Engineering",
"Topic :: Software Development :: Libraries :: Python Modules",
"Topic :: Utilities",
# "License :: OSI Approved :: BSD License",
# "Typing :: Typed",
]
# add your package dependencies here
dependencies = [
"napari>=0.4.13",
"omero-py",
"omero-rois",
"importlib-metadata; python_version < '3.8'",
]
# https://peps.python.org/pep-0621/#dependencies-optional-dependencies
# "extras" (e.g. for `pip install .[test]`)
[project.optional-dependencies]
all = ["napari[all]"]
# add dependencies used for testing here
test = [
"pytest",
"pytest-cov",
"pytest-qt",
"pytest-regressions",
"pywin32; sys_platform == 'win32'",
]
# add anything else you like to have in your dev environment here
dev = [
"black",
"ipython",
"mypy",
"pdbpp", # https://github.com/pdbpp/pdbpp
"rich", # https://github.com/Textualize/rich
"ruff",
]
[project.urls]
homepage = "https://github.com/tlambert03/napari-omero"
repository = "https://github.com/tlambert03/napari-omero"
# Entry points
# https://peps.python.org/pep-0621/#entry-points
# same as console_scripts entry point
[project.scripts]
napari-omero = "napari_omero.__main__:main"
[project.entry-points."napari.manifest"]
napari-omero = "napari_omero:napari.yaml"
# https://beta.ruff.rs/docs/rules/
[tool.ruff]
line-length = 88
target-version = "py37"
select = [
"E", # style errors
"W", # style warnings
"F", # flakes
"I", # isort
"UP", # pyupgrade
"B", # flake8-bugbear
"A001", # flake8-builtins
"RUF", # ruff-specific rules
]
ignore = [
"D100", # Missing docstring in public module
"D107", # Missing docstring in __init__
"D203", # 1 blank line required before class docstring
"D212", # Multi-line docstring summary should start at the first line
"D213", # Multi-line docstring summary should start at the second line
"D401", # First line should be in imperative mood
"D413", # Missing blank line after last section
"D416", # Section name should end with a colon
]
[tool.ruff.per-file-ignores]
"tests/*.py" = ["D", "S"]
"setup.py" = ["D"]
# https://mypy.readthedocs.io/en/stable/config_file.html
[tool.mypy]
files = "src/**/"
strict = false
check_untyped_defs = true
ignore_missing_imports = true
disallow_any_generics = false
disallow_subclassing_any = false
show_error_codes = true
pretty = true
# https://docs.pytest.org/en/6.2.x/customize.html
[tool.pytest.ini_options]
minversion = "6.0"
testpaths = ["tests"]
filterwarnings = [
"error",
"ignore:distutils Version classes are deprecated:",
"ignore:the imp module is deprecated in:",
"ignore:'U' mode is deprecated",
"ignore:Please import PackageMetadata from 'npe2'",
"ignore:`np.bool8` is a deprecated alias for `np.bool_`:DeprecationWarning:skimage",
]
# https://coverage.readthedocs.io/en/6.4/config.html
[tool.coverage.report]
exclude_lines = [
"pragma: no cover",
"if TYPE_CHECKING:",
"@overload",
"except ImportError",
"\\.\\.\\.",
"raise NotImplementedError()",
]
[tool.coverage.run]
source = ["src"]
# https://github.com/mgedmin/check-manifest#configuration
# add files that you want check-manifest to explicitly ignore here
# (files that are in the repo but shouldn't go in the package)
[tool.check-manifest]
ignore = [
".github_changelog_generator",
".pre-commit-config.yaml",
".ruff_cache/**/*",
"setup.py",
"tests/**/*",
]