GitHub - tlawrence3/CYANO-MLP

Branches Tags

Name		Name	Last commit message	Last commit date
Latest commit History 4 Commits
CYANO-MLP		CYANO-MLP
LOOCV		LOOCV
Leave_Clade_Out		Leave_Clade_Out
data		data
results		results
LICENSE		LICENSE
README		README
eight_model_LOOCV_scores_alpha.txt		eight_model_LOOCV_scores_alpha.txt
glithophora.scores.txt		glithophora.scores.txt
plastid.tRNAs.aligned.final.scores		plastid.tRNAs.aligned.final.scores

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Code and Data for:
tRNA functional signatures classify plastids as late-branching cyanobacteria (https://doi.org/10.1186/s12862-019-1552-7)

Directories 
CYANO-MLP: Python code for CYANO-MLP
LOOCV: Scripts and files to perform Leave-One-Out Cross-Validation analysis
Leave_Clade_Out: Code and files for additional iterations of CYANO-MLP
data: tRNAs sequences for plastids and cyanobacteria and ncbi accession numbers for cyanobacterial genomes

Files
eight_model_LOOCV_scores_alpha.txt: cyanobacterial score vectors calculated using LOOCV used for training CYANO-MLP
glithophora.scores.txt: score vector for G. lithophora genomes
plastid.tRNAs.aligned.final.scores: score vectors for plastid genomes