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Update CONTRIBUTING.md #362

Update CONTRIBUTING.md

Update CONTRIBUTING.md #362

name: Jupyter Notebooks CI
on: [push, pull_request]
jobs:
Check-Notebooks:
runs-on: ubuntu-latest
defaults:
run:
shell: bash -el {0}
steps:
- name: check out repository code
uses: actions/checkout@v3
- name: set up conda environment
uses: conda-incubator/setup-miniconda@v2
with:
miniforge-version: latest
miniforge-variant: mambaforge
channel-priority: strict
channels: conda-forge
show-channel-urls: true
use-only-tar-bz2: true
auto-update-conda: true
auto-activate-base: false
activate-environment: notebook-env
- name: Install tobac dependencies
run: |
mamba install -c conda-forge --yes ffmpeg gcc jupyter pytables
mamba install -c conda-forge --yes --file example_requirements.txt
- name: Install tobac
run: |
pip install .
- name: Find all notebook files
run: |
find . -type f -name '*.ipynb' > nbfiles.txt
cat nbfiles.txt
- name: Execute all notebook files
run: |
while IFS= read -r nbpath; do
jupyter nbconvert --inplace --ClearMetadataPreprocessor.enabled=True --clear-output $nbpath
jupyter nbconvert --to notebook --inplace --execute $nbpath
done < nbfiles.txt