[solidago] Update docstrings and add simple API for Pipeline

backend/ml/inputs.py

@@ -14,6 +14,7 @@
     ContributorScaling,
     Entity,
 )
+from vouch.models import Voucher
 
 
 class MlInputFromDb(TournesolInput):
@@ -189,3 +190,14 @@ def get_individual_scores(
 
         dtf = pd.DataFrame(values)
         return dtf[["user_id", "entity", "criteria", "raw_score"]]
+
+    def get_vouches(self):
+        values = Voucher.objects.filter(
+            by__is_active=True,
+            to__is_active=True,
+        ).values(
+            voucher="by__id",
+            vouchee="to__id",
+            vouch="value",
+        )
+        return pd.DataFrame(values)

backend/tournesol/lib/public_dataset.py

@@ -291,7 +291,7 @@ def write_comparisons_file(
         "criteria",
         "score",
         "score_max",
-        "week_date"
+        "week_date",
     ]
     writer = csv.DictWriter(write_target, fieldnames=fieldnames)
     writer.writeheader()
@@ -413,7 +413,9 @@ def write_vouchers_file(write_target):
             "to_username": voucher.to.username,
             "value": voucher.value,
         }
-        for voucher in Voucher.objects.filter(is_public=True)
-        .select_related("by", "to")
-        .order_by("by__username", "to__username")
+        for voucher in (
+            Voucher.objects.filter(is_public=True, by__is_active=True, to__is_active=True)
+            .select_related("by", "to")
+            .order_by("by__username", "to__username")
+        )
     )

solidago/experiments/tournesol.py

@@ -38,8 +38,6 @@
     for entity_id, video_id in enumerate(inputs.entity_id_to_video_id)
 }
 
-logger.info("Preprocessing data for the pipeline")
-users, vouches, all_entities, privacy = inputs.get_pipeline_objects()
 
 # criteria = set(inputs.comparisons["criteria"])
 criteria = { "largely_recommended" }
@@ -89,13 +87,18 @@
 
 user_outputs, entities, voting_rights, scaled_user_models = dict(), dict(), dict(), dict()
 
-users = pipeline.trust_propagation(users, vouches)
 
 for c in criteria:
     logger.info(f"Running the pipeline for criterion `{c}`")
-
-    judgments = inputs.get_judgments(c)
-
+
+    pipeline_objects = inputs.get_pipeline_kwargs(criterion=c)
+    users = pipeline_objects["users"]
+    vouches = pipeline_objects["vouches"]
+    all_entities = pipeline_objects["entities"]
+    privacy = pipeline_objects["privacy"]
+    judgments = pipeline_objects["judgments"]
+
+    users = pipeline.trust_propagation(users, vouches)
     voting_rights[c], entities[c] = pipeline.voting_rights(users, all_entities, vouches, privacy)
     user_models = pipeline.preference_learning(judgments, users, entities[c])
     scaled_user_models[c] = pipeline.scaling(user_models, users, entities[c], voting_rights[c], privacy)

solidago/src/solidago/pipeline/__init__.py

@@ -1,3 +1,5 @@
 from .inputs import TournesolInput
 from .outputs import PipelineOutput
 from .pipeline import DefaultPipeline, Pipeline
+
+__all__ = ["TournesolInput", "DefaultPipeline", "Pipeline", "PipelineOutput"]

solidago/src/solidago/pipeline/inputs.py

@@ -57,6 +57,58 @@ def get_individual_scores(
     ) -> Optional[pd.DataFrame]:
         raise NotImplementedError
 
+    @abstractmethod
+    def get_vouches(self):
+        """Fetch data about vouches shared between users
+
+        Returns:
+        - DataFrame with columns
+            * `voucher`: int, user_id of the user who gives the vouch
+            * `vouchee`: int, user_id of the user who receives the vouch
+            * `vouch`: float, value of this vouch
+        """
+        raise NotImplementedError
+
+    def get_users(self):
+        users = self.ratings_properties.groupby("user_id").first()[["trust_score"]]
+        users["is_pretrusted"] = users["trust_score"] >= 0.8
+        return users
+
+    def get_pipeline_kwargs(self, criterion: str):
+        ratings_properties = self.ratings_properties
+        users = self.get_users()
+        vouches = self.get_vouches()
+        comparisons = self.get_comparisons(criteria=criterion)
+        entities_ids = set(comparisons["entity_a"].unique()) | set(
+            comparisons["entity_b"].unique()
+        )
+        entities = pd.DataFrame(index=list(entities_ids))
+
+        privacy = PrivacySettings()
+        user_entity_pairs = set(
+            comparisons[["user_id", "entity_a"]].itertuples(index=False, name=None)
+        ).union(comparisons[["user_id", "entity_b"]].itertuples(index=False, name=None))
+        for rating in ratings_properties.itertuples():
+            if (rating.user_id, rating.entity_id) in user_entity_pairs:
+                privacy[(rating.user_id, rating.entity_id)] = not rating.is_public
+
+        judgments = DataFrameJudgments(
+            comparisons=comparisons.rename(
+                columns={
+                    "score": "comparison",
+                    "score_max": "comparison_max",
+                }
+            )
+        )
+
+        return {
+            "users": users,
+            "vouches": vouches,
+            "entities": entities,
+            "privacy": privacy,
+            "judgments": judgments,
+        }
+
 
 class TournesolInputFromPublicDataset(TournesolInput):
     def __init__(self, dataset_zip: Union[str, BinaryIO]):
@@ -72,14 +124,18 @@ def __init__(self, dataset_zip: Union[str, BinaryIO]):
                 self.comparisons = pd.read_csv(comparison_file, keep_default_na=False)
                 self.entity_id_to_video_id = pd.Series(
                     list(set(self.comparisons.video_a) | set(self.comparisons.video_b)),
-                    name="video_id"
+                    name="video_id",
                 )
                 video_id_to_entity_id = {
                     video_id: entity_id
                     for (entity_id, video_id) in self.entity_id_to_video_id.items()
                 }
-                self.comparisons["entity_a"] = self.comparisons["video_a"].map(video_id_to_entity_id)
-                self.comparisons["entity_b"] = self.comparisons["video_b"].map(video_id_to_entity_id)
+                self.comparisons["entity_a"] = self.comparisons["video_a"].map(
+                    video_id_to_entity_id
+                )
+                self.comparisons["entity_b"] = self.comparisons["video_b"].map(
+                    video_id_to_entity_id
+                )
                 self.comparisons.drop(columns=["video_a", "video_b"], inplace=True)
 
             with (zipfile.Path(zip_file) / "users.csv").open(mode="rb") as users_file:
@@ -90,26 +146,25 @@ def __init__(self, dataset_zip: Union[str, BinaryIO]):
                 # Fill trust_score on newly created users for which it was not computed yet
                 self.users.trust_score = pd.to_numeric(self.users.trust_score).fillna(0.0)
 
-            username_to_user_id = pd.Series(
+            self.username_to_user_id = pd.Series(
                 data=self.users.index, index=self.users["public_username"]
             )
-            self.comparisons = self.comparisons.join(username_to_user_id, on="public_username")
-            
+            self.comparisons = self.comparisons.join(self.username_to_user_id, on="public_username")
+
             with (zipfile.Path(zip_file) / "vouchers.csv").open(mode="rb") as vouchers_file:
                 # keep_default_na=False is required otherwise some public usernames
                 # such as "NA" are converted to float NaN.
                 self.vouchers = pd.read_csv(vouchers_file, keep_default_na=False)
-            
+
             with (zipfile.Path(zip_file) / "collective_criteria_scores.csv").open(mode="rb") as collective_scores_file:
                 # keep_default_na=False is required otherwise some public usernames
                 # such as "NA" are converted to float NaN.
                 self.collective_scores = pd.read_csv(collective_scores_file, keep_default_na=False)
-            
+
             with (zipfile.Path(zip_file) / "individual_criteria_scores.csv").open(mode="rb") as individual_scores_file:
                 # keep_default_na=False is required otherwise some public usernames
                 # such as "NA" are converted to float NaN.
                 self.individual_scores = pd.read_csv(individual_scores_file, keep_default_na=False)
-
 
     @classmethod
     def download(cls) -> "TournesolInputFromPublicDataset":
@@ -153,27 +208,16 @@ def get_individual_scores(
     ) -> Optional[pd.DataFrame]:
         # TODO: read contributor scores from individual_scores.csv
         return None
-
-    def get_pipeline_objects(self):
-        users = self.users
-        users = users.assign(is_pretrusted=(users["trust_score"] >= 0.8))
-        vouches = pd.DataFrame(columns=["voucher", "vouchee", "vouch"])
-        entities_indices = set(self.comparisons["entity_a"]) | set(self.comparisons["entity_b"])
-        entities = pd.DataFrame(index=list(entities_indices))
-        entities.index.name = "entity_id"
-        privacy = PrivacySettings()
-        for (user_id, entity_id) in set(
-            self.comparisons[["user_id", "entity_a"]].itertuples(index=False, name=None)
-        ).union(
-            self.comparisons[["user_id", "entity_b"]].itertuples(index=False, name=None)
-        ):
-            privacy[user_id, entity_id] = False
-        return users, vouches, entities, privacy
-
-    def get_judgments(self, criterion):
-        comparisons = self.comparisons
-        if criterion is not None:
-            comparisons = comparisons[comparisons["criteria"] == criterion]
-        comparisons = comparisons.rename(columns={"score": "comparison"})
-        comparisons = comparisons.assign(comparison_max=[10] * len(comparisons))
-        return DataFrameJudgments(comparisons=comparisons)
+
+    def get_vouches(self):
+        vouchers = self.vouchers[
+            self.vouchers.by_username.isin(self.username_to_user_id.index)
+            & self.vouchers.to_username.isin(self.username_to_user_id.index)
+        ]
+        return pd.DataFrame(
+            {
+                "voucher": vouchers.by_username.map(self.username_to_user_id),
+                "vouchee": vouchers.to_username.map(self.username_to_user_id),
+                "vouch": vouchers.value,
+            }
+        )

solidago/src/solidago/pipeline/pipeline.py

@@ -16,6 +16,7 @@
 from solidago.aggregation import Aggregation, StandardizedQrMedian, StandardizedQrQuantile, Average, EntitywiseQrQuantile
 from solidago.post_process import PostProcess, Squash, NoPostProcess
 
+from solidago.pipeline.inputs import TournesolInput
 from solidago.pipeline.outputs import PipelineOutput
 
 logger = logging.getLogger(__name__)
@@ -82,7 +83,7 @@ def __init__(
         aggregation: Aggregation = DefaultPipeline.aggregation,
         post_process: PostProcess = DefaultPipeline.post_process,
     ):
-        """ Instantiates the pipeline components.
+        """Instantiates the pipeline components.
 
         Parameters
         ----------
@@ -118,7 +119,22 @@ def from_json(cls, json) -> "Pipeline":
             aggregation=aggregation_from_json(json["aggregation"]),
             post_process=post_process_from_json(json["post_process"]),
         )
-
+
+    def run(
+        self,
+        input: TournesolInput,
+        criterion: str,
+        output: Optional[PipelineOutput] = None
+    ):
+        # TODO: criterion should be managed by TournesolInput
+
+        # TODO: read existing individual scores from input
+        # to pass `init_user_models`
+        return self(
+            **input.get_pipeline_kwargs(criterion),
+            output=output,
+        )
+
     def __call__(
         self,
         users: pd.DataFrame,
@@ -148,8 +164,6 @@ def __call__(
             judgments[user] must yield the judgment data provided by the user
         init_user_models: dict[int, ScoringModel]
             user_models[user] is the user's model
-        skip_set: set[int]
-            Steps that are skipped in the pipeline
 
         Returns
         -------
@@ -229,8 +243,8 @@ def to_json(self):
             post_process=self.post_process.to_json()
         )
 
+    @staticmethod
     def save_individual_scalings(
-        self,
         user_models: dict[int, ScaledScoringModel],
         output: PipelineOutput,
     ):
@@ -251,8 +265,8 @@ def save_individual_scalings(
         )
         output.save_individual_scalings(scalings_df)
 
+    @staticmethod
     def save_individual_scores(
-        self,
         user_scorings: dict[int, ScoringModel],
         raw_user_scorings: dict[int, ScoringModel],
         voting_rights: VotingRights,

solidago/src/solidago/preference_learning/__init__.py

@@ -1,4 +1,4 @@
-""" Step 3 of the pipeline.
+""" **Step 3 of the pipeline**
 
 Preference learning infers, for each user and based on their data,
 a model of the user's preferences.
@@ -13,3 +13,6 @@
     from .lbfgs_generalized_bradley_terry import LBFGSUniformGBT
 except RuntimeError:
     pass
+
+
+__all__ = ["PreferenceLearning", "UniformGBT", "LBFGSUniformGBT"]

solidago/src/solidago/preference_learning/base.py

@@ -26,7 +26,7 @@ def __call__(
 
         Parameters
         ----------
-        user_judgments: dict[str, pd.DataFrame]
+        judgments:
             May contain different forms of judgments,
             but most likely will contain "comparisons" and/or "assessments"
         entities: DataFrame with columns
@@ -35,8 +35,9 @@ def __call__(
         initialization: dict[int, ScoringModel] or ScoringModel or None
             Starting models, added to facilitate optimization
             It is not supposed to affect the output of the training
-        new_judgments: New judgments
-           This allows to prioritize coordinate descent, starting with newly evaluated entities
+        new_judgments:
+            New judgments
+            This allows to prioritize coordinate descent, starting with newly evaluated entities
 
         Returns
         -------
@@ -79,8 +80,9 @@ def user_learn(
         initialization: ScoringModel or None
             Starting model, added to facilitate optimization
             It is not supposed to affect the output of the training
-        new_judgments: New judgments
-           This allows to prioritize coordinate descent, starting with newly evaluated entities
+        new_judgments:
+            New judgments
+            This allows to prioritize coordinate descent, starting with newly evaluated entities
 
         Returns
         -------

solidago/src/solidago/preference_learning/generalized_bradley_terry.py

@@ -252,12 +252,8 @@ def __init__(
     ):
         """
 
-        Parameters
+        Parameters (TODO)
         ----------
-        initialization: dict[int, float]
-            previously computed entity scores
-        error: float
-            tolerated error
         """
         super().__init__(prior_std_dev, convergence_error)
         self.cumulant_generating_function_error = cumulant_generating_function_error

solidago/src/solidago/preference_learning/lbfgs_generalized_bradley_terry.py

@@ -175,12 +175,8 @@ def __init__(
         max_iter: int = 100,
     ):
         """
-        Parameters
+        Parameters (TODO)
         ----------
-        initialization: dict[int, float]
-            previously computed entity scores
-        error: float
-            tolerated error
         """
         super().__init__(prior_std_dev, convergence_error, max_iter=max_iter)
         self.cumulant_generating_function_error = cumulant_generating_function_error

solidago/src/solidago/trust_propagation/__init__.py

@@ -1,4 +1,4 @@
-""" Step 1 of the pipeline.
+""" **Step 1 in the pipeline**
 
 Trust propagation is tasked to combine pretrusts and vouches
 to derive trust scores for the different users.
@@ -8,3 +8,5 @@
 from .no_trust_propagation import NoTrustPropagation
 from .lipschitrust import LipschiTrust
 from .trust_all import TrustAll
+
+__all__ = ["TrustPropagation", "NoTrustPropagation", "LipschiTrust", "TrustAll"]