Make the code aware of the mrtrix directory #86

	name: CI

	on:
	push:
	# The docker branch tracks master, so it doesn't need testing separately
	branches-ignore:
	docker
	pull_request:

	defaults:
	run:
	shell: bash

	jobs:
	# This workflow contains a single job called "check"
	check:
	runs-on: ubuntu-latest
	strategy:
	fail-fast: false
	matrix:
	R: [ '3.6.2', '4.2.3', 'release' ]

	steps:
	- name: Check out code
	uses: actions/checkout@v3
	with:
	submodules: true

	- name: Install and set up R
	uses: r-lib/actions/setup-r@v2
	with:
	r-version: ${{ matrix.R }}

	- name: Cache dependencies
	id: cache-deps
	uses: actions/cache@v3
	with:
	path: lib/R
	key: ${{ runner.os }}-deps-${{ matrix.R }}-${{ hashFiles('lib/*/DESCRIPTION') }}

	- if: ${{ steps.cache-deps.outputs.cache-hit != 'true' }}
	name: Install dependencies
	run: make install-libs

	- name: Install main packages
	run: make install-main

	- name: Run tests
	run: make deeptest

	- name: Generate debug test output
	if: failure()
	run: make dtest

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