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README.md

plant

To compile the paper, including figures and supplementary information (vignettes) we use remake. The easiest way to install is via drat:

drat:::add("traitecoevo")
install.packages("remake")

(install drat itself with install.packages("drat"))

Compilation requires pandoc, or the rmarkdown renderer will fail with a cryptic error (version 0.5.1 at least), and a reasonably complete LaTeX installation (e.g. MacTeX).

We use the non-CRAN packages plant, callr and sowsear. These can be installed by remake:

remake::install_missing_packages()

To compile everything, run

remake::make()

Compilation, including vignettes, takes about 1.5 hours on a 2012 iMac. Compiling just the figures and manuscript can be done with:

remake::make("ms.pdf")

and should only take 20 minutes or so.