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Example analysis scripts and data sets for the TRansfer ENTropy TOOLbox.

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TRENTOOL3_exampledata

This repository contains example data to demonstrate the basic use of the TRENTOOL toolbox. Every folder contains one or several data sets (.mat-files) together with an analysis script (analyze_*.m), a plotting script (plot_*.m) and a simulation script (simulate_*.m) if applicable.

Prior to running an example analysis, you have to download TRENTOOL3 and the FieldTrip toolbox. Both toolboxes have to be added to your MATLAB path (using addpath) and you have to run ft_defaults. To run an example script, navigate to the subfolder of TRENTOOL_exampledata and call the respective script as a function. Each script takes a variable outputfolder as input, which specifies a path to which TRENTOOL will save intermediate results. For example:

addpath('~/TRENTOOL3-master/')
addpath('~/fieldtrip-20150205/');
ft_defaults;
cd('~/TRENTOOL-exampledata/Lorenz_2_systems');
myOutputpath = '~/TRENTOOL_results/';
analyze_lorenz_2_systems_CPU(myOutputpath)
plot_lorenz_2_systems_CPU(myOutputpath)

Make sure you have created the respective output folder before you start an example analysis.

More information regarding individual examples can be found in the MATLAB help of each script.

TRENTOOL Version 3.32 - Frankfurt, 2015

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Example analysis scripts and data sets for the TRansfer ENTropy TOOLbox.

http://trentool.github.io/TRENTOOL3/

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