natural_dispersal: pathway level1 and level2 not correct

[damianooldoni]

I used the first underscore (_) to distinguish pathway level 1 and pathway level 2 (see pathway table). This is good for all possibilities except natural_dispersal, which is a pathway level1, and should be not divided in two levels.
Thanks to @SanderDevisscher to find this bug. I try to solve it now.

[damianooldoni]

Bug solved: output file data_input_checklist_indicators.tsv is updated.
Internet site of pathways is not updated. Travis CI was taking too much time to make a new version and any attempt was aborted. Still, data are ok now.

@SanderDevisscher : check it again and close issue if problem is solved. Thanks.

[damianooldoni]

@SanderDevisscher : can this be closed? I think so.

[SanderDevisscher]

@damianooldoni Yes

[damianooldoni]

Based on a scheme provided by @timadriaens, I find that natural_dispersal is a pathway level 2, the only one belonging to pathway level 1 unaided. I modify the mapping now.

Another little doubt: I see in unified taxa with pathway cbd_2014_pathway:unaided and other taxa with pathway cbd_2014_pathway:natural_dispersal. So, I will map cbd_2014_pathway:unaided by assigning value unknown to level 2:

pathway original (from description extension)	pathway_level1	pathway_level2
cbd_2014_pathway:unaided	unaided	unknown
cbd_2014_pathway:natural_dispersal	unaided	natural_dispersal

@timadriaens , @SanderDevisscher , are you ok with this?

[timadriaens]

This kind of question is of course easier to answer if I had a few species as an example. But indeed, unaided = spontaneous dispersal from other areas where the species was introduced. So it is the same as natural dispersal. In other words: yes, very much ok @damianooldoni, thx for spotting this (it is an important pathway for the Union List species).

[damianooldoni]

Thanks @timadriaens. I wrote issues in each checklist where this occurred (see links above).

Actually there are two problems in one:

• cbd_2014_pathway:natural_dispersal is wrong, it should be cbd_2014_pathway:unaided_natural_dispersal: see issue in RINSE pathway

• cbd_2014_pathway:unaided is correct but based on your comment could be improved to cbd_2014_pathway:unaided_natural_dispersal (otherwise we have no info at level 2)

Meanwhile I write a patch in the preprocessing of unified data for checklist indicators and I map both cbd_2014_pathway:unaided and cbd_2014_pathway:natural_dispersal to cbd_2014_pathway:unaided_natural_dispersal.

[timadriaens]

perfect