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Intrelab: Switch to target based Intrelab CMake build #10631

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merged 15 commits into from
Jul 18, 2022
Merged

Intrelab: Switch to target based Intrelab CMake build #10631

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0d31074
Intrelab: Switch to target based Intrelab CMake build
kuberry Jun 17, 2022
887dbb0
Add mac version of matlab_add_mex()
kuberry Jun 17, 2022
b14d4ec
Make intrelab libraries installable
kuberry Jun 17, 2022
2f6d8b3
Change comment about matlab directory
kuberry Jun 17, 2022
4e027db
Remove custom matlab_add_mex_mac()
kuberry Jun 22, 2022
0368ebf
Removed redundant CXX flag copying
kuberry Jun 24, 2022
4e000b4
Remove sysroot modification and warning for mac
kuberry Jun 24, 2022
b1afc4a
Support MATLAB_ROOT_DIR (all caps) variable setting
kuberry Jun 28, 2022
567eb28
Removed m2i_helpers as a target and moved it to a source
kuberry Jun 29, 2022
b9aa9d0
Update CMake version, installation variables, and formatting
kuberry Jul 5, 2022
02c6880
Switch from Trilinos::all_libs to Trilinos::all_selected_libs
kuberry Jul 5, 2022
f772b2a
Change required CMake version to 3.17.0 and support Trilinos_DIR
kuberry Jul 5, 2022
46c3ba3
Make output less verbose
kuberry Jul 6, 2022
9b31e86
Change INST_DIR to a CACHE variable
kuberry Jul 6, 2022
5011ab5
Removed INST_DIR in favor of CMAKE_INSTALL_PREFIX
kuberry Jul 6, 2022
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272 changes: 102 additions & 170 deletions packages/intrepid/matlab/intrelab/CMakeLists.txt
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Original file line number Diff line number Diff line change
Expand Up @@ -9,189 +9,121 @@
#

PROJECT(Intrelab)
CMAKE_MINIMUM_REQUIRED(VERSION 3.10)

# --> ACTION: define Trilinos install directory
#set(TRILINOS_INSTALL_DIR "/Users/pakuber/Compadre/Trilinos-new/pthread/install_release")
set(TRILINOS_INSTALL_DIR "/ascldap/users/pakuber/Compadre/Trilinos-intrelab/build/install")
if(DEFINED ENV{TRILINOS_INSTALL_DIR})
set(TRILINOS_INSTALL_DIR $ENV{TRILINOS_INSTALL_DIR})
CMAKE_MINIMUM_REQUIRED(VERSION 3.17.0 FATAL_ERROR)
set(CMAKE_INSTALL_RPATH_USE_LINK_PATH TRUE)
#set(MATLAB_FIND_DEBUG TRUE)

# --> ACTIONS:
# 1.) Specify Trilinos install directory with -DTrilinos_ROOT = (case-sensitive)
# Also accepts: TRILINOS_ROOT, Trilinos_DIR, TRILINOS_DIR }
# 2.) Specify Matlab install directory with -DMatlab_ROOT_DIR = (case-sensitive and note extra _DIR)
# Also accepts: MATLAB_ROOT, Matlab_ROOT, MATLAB_ROOT_DIR
# 3.) Specify directory to install intrelab -DCMAKE_INSTALL_PREFIX = (case-sensitive)

# define install directory (full path or relative to the intrelab directory)
# per https://cmake.org/cmake/help/latest/variable/CMAKE_INSTALL_PREFIX_INITIALIZED_TO_DEFAULT.html
if(CMAKE_INSTALL_PREFIX_INITIALIZED_TO_DEFAULT)
set(CMAKE_INSTALL_PREFIX "${CMAKE_SOURCE_DIR}/install" CACHE PATH "..." FORCE)
endif()


# --> ACTION: define Matlab binary directory
#set(MATLAB_BIN_DIR "/Applications/MATLAB_R2020a.app/bin/")
set(MATLAB_BIN_DIR "/usr/local/matlab/R2021b/bin/")
if(DEFINED ENV{MATLAB_BIN_DIR})
set(MATLAB_BIN_DIR $ENV{MATLAB_BIN_DIR})
# handle Matlab_ROOT_DIR and all variants
# allow for {Matlab_ROOT_DIR, MATLAB_ROOT_DIR, Matlab_ROOT, MATLAB_ROOT}
if (MATLAB_ROOT_DIR)
set(Matlab_ROOT_DIR ${MATLAB_ROOT_DIR})
endif()

# --> ACTION: define install directory (full path or relative to the intrelab directory)
set(INST_DIR "install")


set(CMAKE_PREFIX_PATH ${TRILINOS_INSTALL_DIR} ${CMAKE_PREFIX_PATH})
if(IS_ABSOLUTE ${INST_DIR})
set(CMAKE_INSTALL_PREFIX ${INST_DIR})
else()
set(CMAKE_INSTALL_PREFIX "${CMAKE_CURRENT_SOURCE_DIR}/${INST_DIR}")
if (Matlab_ROOT)
set(Matlab_ROOT_DIR ${Matlab_ROOT})
endif()

FIND_PACKAGE(Trilinos REQUIRED)

# set Matlab mex path with -largeArrayDims option
set(MEX "${MATLAB_BIN_DIR}/mex")
message(STATUS "MEX: ${MEX}")

# set compilers to Trilinos compilers
set(CMAKE_CXX_COMPILER ${Trilinos_CXX_COMPILER})
set(CMAKE_C_COMPILER ${Trilinos_C_COMPILER})

# set flags to Trilinos flags
set(CMAKE_CXX_FLAGS ${Trilinos_CXX_COMPILER_FLAGS})

# Trilinos doesn't propagate its C++ standard
set(MEX_FLAGS "${CMAKE_CXX_FLAGS} -std=c++17 -fPIC")
if (APPLE)
# Trilinos doesn't propagate its sysroot
message(STATUS "CMAKE_OSX_SYSROOT: ${CMAKE_OSX_SYSROOT}")
set(MEX_FLAGS "--sysroot=${CMAKE_OSX_SYSROOT} ${MEX_FLAGS}")
endif(APPLE)

list (APPEND CMAKE_INSTALL_RPATH ${Trilinos_LIBRARY_DIRS})
list (APPEND CMAKE_INSTALL_RPATH ${Trilinos_TPL_LIBRARY_DIRS})

if (Trilinos_INCLUDE_DIRS)
set(Trilinos_INCLUDE_DIRS "-I${Trilinos_INCLUDE_DIRS}")
if (MATLAB_ROOT)
set(Matlab_ROOT_DIR ${MATLAB_ROOT})
endif()
if (Trilinos_TPL_INCLUDE_DIRS)
set(Trilinos_TPL_INCLUDE_DIRS "-I${Trilinos_TPL_INCLUDE_DIRS}")
# look for environment variable and give it precedence
# allow for {MATLAB_ROOT, Matlab_ROOT, MATLAB_ROOT_DIR, Matlab_ROOT_DIR}
if(DEFINED ENV{MATLAB_ROOT})
set(Matlab_ROOT_DIR $ENV{MATLAB_ROOT})
endif()
if (Trilinos_LIBRARY_DIRS)
set(Trilinos_LIBRARY_DIRS "-L${Trilinos_LIBRARY_DIRS}")
if(DEFINED ENV{Matlab_ROOT})
set(Matlab_ROOT_DIR $ENV{Matlab_ROOT})
endif()
if (Trilinos_TPL_LIBRARY_DIRS)
set(Trilinos_TPL_LIBRARY_DIRS "-L${Trilinos_TPL_LIBRARY_DIRS}")
if(DEFINED ENV{MATLAB_ROOT_DIR})
set(Matlab_ROOT_DIR $ENV{MATLAB_ROOT_DIR})
endif()

set(l_Trilinos "")
foreach(alib ${Trilinos_LIBRARIES})
set(l_Trilinos "${l_Trilinos} -l${alib}")
endforeach()

set(l_Trilinos_TPL "")
foreach(alib ${Trilinos_TPL_LIBRARIES})
# check if library has a "." in it
string(REGEX MATCH "\.*" lib_ext_result ${alib})
if (lib_ext_result)

if (APPLE)
string(FIND ${alib} ".tbd" alib_result)
# make sure .tbd not found in library name
else()
string(FIND ${alib} ".so" alib_result)
# make sure .so not found in library name
endif(APPLE)

if (alib_result LESS 0)
# extension found but not .tbd or .so
message(FATAL_ERROR "${alib} encountered as TPL with unrecognized file extension.")
else()
# remove extension and get library name
get_filename_component(libname ${alib} NAME_WLE)
string(SUBSTRING ${libname} 3 -1 reduced_libname)
set(l_Trilinos_TPL "${l_Trilinos_TPL} -l${reduced_libname}")
endif()
else()
# no extension on library name
set(l_Trilinos_TPL "${l_Trilinos_TPL} -l${alib}")
endif()
endforeach()

if(APPLE)
if(Trilinos_BUILD_SHARED_LIBS)
set(MEX_LD_FLAGS "LDFLAGS=")
set(MEX_LD_FLAGS "${MEX_LD_FLAGS} -rpath ${Trilinos_INSTALL_DIR}/lib")
set(MEX_LD_FLAGS "${MEX_LD_FLAGS} -rpath ${MATLAB_BIN_DIR}/maci64")
set(MEX_LD_FLAGS "${MEX_LD_FLAGS} -shared")
endif()
else()
set(MEX_LD_FLAGS "LDFLAGS=")
foreach(rp ${CMAKE_INSTALL_RPATH})
set(MEX_LD_FLAGS "${MEX_LD_FLAGS} -Wl,-R,${rp}")
endforeach()
set(MEX_LD_FLAGS "${MEX_LD_FLAGS} -Wl,-R,${MATLAB_BIN_DIR}/glnxa64")
set(MEX_LD_FLAGS "${MEX_LD_FLAGS} -Wl,--enable-new-dtags")
if(DEFINED ENV{Matlab_ROOT_DIR})
set(Matlab_ROOT_DIR $ENV{Matlab_ROOT_DIR})
endif()
if (NOT Matlab_ROOT_DIR)
message(WARNING "Matlab_ROOT_DIR has NOT been specified.")
endif()
set(Matlab_ROOT_DIR "${Matlab_ROOT_DIR}" CACHE STRING "Matlab installation directory")

separate_arguments(ll UNIX_COMMAND ${l_Trilinos})
set(l_Trilinos ${ll})

separate_arguments(ll UNIX_COMMAND ${l_Trilinos_TPL})
set(l_Trilinos_TPL ${ll})

if(APPLE)
set(MEX_EXTENSION "mexmaci64")
else()
set(MEX_EXTENSION "mexa64")
endif(APPLE)

# create objs folder
file(MAKE_DIRECTORY ${CMAKE_CURRENT_BINARY_DIR}/objs)
add_custom_command(OUTPUT ${CMAKE_CURRENT_BINARY_DIR}/objs/m2i_helpers.o
COMMAND "${MEX}" "CXX=${CMAKE_CXX_COMPILER}" "CXXFLAGS=${MEX_FLAGS}" "-largeArrayDims" -c ${Trilinos_INCLUDE_DIRS} ${Trilinos_TPL_INCLUDE_DIRS} "${CMAKE_CURRENT_SOURCE_DIR}/src/m2i_helpers.cpp"
BYPRODUCTS ${CMAKE_CURRENT_BINARY_DIR}/objs/m2i_helpers.o
DEPENDS ${CMAKE_CURRENT_SOURCE_DIR}/src/m2i_helpers.cpp
WORKING_DIRECTORY ${CMAKE_CURRENT_BINARY_DIR}/objs
)
find_package(Matlab REQUIRED)

# handle Trilinos_ROOT and all variants
# allow for {Trilinos_DIR, TRILINOS_DIR, Trilinos_ROOT, TRILINOS_ROOT}
if (TRILINOS_DIR)
set(Trilinos_ROOT ${TRILINOS_DIR})
endif()
if (Trilinos_DIR)
set(Trilinos_ROOT ${Trilinos_DIR})
endif()
if (TRILINOS_ROOT)
set(Trilinos_ROOT ${TRILINOS_ROOT})
endif()
# look for environment variable and give it precedence
if(DEFINED ENV{TRILINOS_ROOT})
set(Trilinos_ROOT $ENV{TRILINOS_ROOT})
endif()
if(DEFINED ENV{Trilinos_ROOT})
set(Trilinos_ROOT $ENV{Trilinos_ROOT})
endif()
if(DEFINED ENV{TRILINOS_DIR})
set(Trilinos_ROOT $ENV{TRILINOS_DIR})
endif()
if(DEFINED ENV{Trilinos_DIR})
set(Trilinos_ROOT $ENV{Trilinos_DIR})
endif()
if ("${Trilinos_ROOT}" STREQUAL "")
message(WARNING "Trilinos_ROOT has NOT been specified.")
endif()
set(Trilinos_ROOT "${Trilinos_ROOT}" CACHE STRING "Trilinos installation directory")

FIND_PACKAGE(Trilinos COMPONENTS Intrepid REQUIRED)
message(STATUS "Found Trilinos: ${Trilinos_INSTALL_DIR}")

set(MOBJS intrepid_setJacobian intrepid_setJacobianInv intrepid_setJacobianDet
intrepid_getNumCubaturePoints intrepid_getCubature intrepid_getBasisValues
intrepid_computeCellMeasure intrepid_HGRADtransformGRAD
intrepid_HGRADtransformVALUE intrepid_multiplyMeasure intrepid_integrate
intrepid_mapToPhysicalFrame intrepid_mapToReferenceFrame
intrepid_scalarMultiplyDataField intrepid_scalarMultiplyDataData
intrepid_dataIntegral intrepid_evaluate intrepid_multiplyVectorDataField
intrepid_dotMultiplyDataField intrepid_vectorMultiplyDataField
intrepid_dotMultiplyDataData intrepid_computeEdgeMeasure
intrepid_computeFaceMeasure intrepid_getCellDeviatoricMat
intrepid_getCellVolumetricMat intrepid_getPhysicalSideNormals
intrepid_mapToReferenceSubcell intrepid_tensorMultiplyDataData
intrepid_tensorMultiplyDataField defGrad;evaluateVectorField
evaluateVectorGradField externalForceElastostaticsTL geometricBmat
intrepid_det intrepid_inverse intrepid_transpose materialBmat
strainEulerianLagrangian stress tangentStiffnessElastostaticsTL
tensorMultiplyDataField myMatVecProductDataField myMatVecProductDataData)

string(TOLOWER "${Trilinos_CMAKE_BUILD_TYPE}" Trilinos_CMAKE_BUILD_TYPE_lower)
function(make_mex fname)
matlab_add_mex(NAME ${fname}
SHARED
SRC ${CMAKE_CURRENT_SOURCE_DIR}/src/m2i_helpers.cpp ${CMAKE_CURRENT_SOURCE_DIR}/src/${fname}.cpp
)
target_link_libraries(${fname} Trilinos::all_selected_libs)
if(Trilinos_CMAKE_BUILD_TYPE_lower STREQUAL "release")
target_compile_options(${fname} PRIVATE "-O3;-march=native;-mtune=native")
endif()
endfunction()

add_custom_command(OUTPUT ${CMAKE_CURRENT_BINARY_DIR}/objs/${fname}.o
COMMAND "${MEX}" "LDFLAGS=-shared" "CXX=${CMAKE_CXX_COMPILER}" "CXXFLAGS=${MEX_FLAGS}" "-largeArrayDims" -c ${Trilinos_INCLUDE_DIRS} ${Trilinos_TPL_INCLUDE_DIRS} "${CMAKE_CURRENT_SOURCE_DIR}/src/${fname}.cpp"
BYPRODUCTS ${CMAKE_CURRENT_BINARY_DIR}/objs/${fname}.o
DEPENDS ${CMAKE_CURRENT_SOURCE_DIR}/src/${fname}.cpp
WORKING_DIRECTORY ${CMAKE_CURRENT_BINARY_DIR}/objs
)

#add_custom_command(OUTPUT ${fname}.${MEX_EXTENSION}
# COMMAND "${MEX}" "LDFLAGS=-shared" "CXX=${CMAKE_CXX_COMPILER}" "CXXFLAGS=${MEX_FLAGS}" "-largeArrayDims" ${Trilinos_INCLUDE_DIRS} ${Trilinos_TPL_INCLUDE_DIRS} ${Trilinos_LIBRARY_DIRS} ${Trilinos_TPL_LIBRARY_DIRS} ${l_Trilinos} ${l_Trilinos_TPL} "${CMAKE_CURRENT_BINARY_DIR}/objs/${fname}.o" "${CMAKE_CURRENT_BINARY_DIR}/objs/m2i_helpers.o"
# DEPENDS ${CMAKE_CURRENT_BINARY_DIR}/objs/${fname}.o ${CMAKE_CURRENT_BINARY_DIR}/objs/m2i_helpers.o
# BYPRODUCTS ${fname}.${MEX_EXTENSION}
# WORKING_DIRECTORY ${CMAKE_CURRENT_BINARY_DIR}
# )

add_custom_command(OUTPUT ${fname}.${MEX_EXTENSION}
COMMAND "${MEX}" "${MEX_LD_FLAGS}" "CXX=${CMAKE_CXX_COMPILER}" "CXXFLAGS=${MEX_FLAGS}" "-largeArrayDims" ${Trilinos_INCLUDE_DIRS} ${Trilinos_TPL_INCLUDE_DIRS} ${Trilinos_LIBRARY_DIRS} ${Trilinos_TPL_LIBRARY_DIRS} ${l_Trilinos} ${l_Trilinos_TPL} "${CMAKE_CURRENT_SOURCE_DIR}/src/${fname}.cpp" "${CMAKE_CURRENT_SOURCE_DIR}/src/m2i_helpers.cpp"
#DEPENDS ${CMAKE_CURRENT_BINARY_DIR}/objs/${fname}.o ${CMAKE_CURRENT_BINARY_DIR}/objs/m2i_helpers.o
BYPRODUCTS ${fname}.${MEX_EXTENSION}
WORKING_DIRECTORY ${CMAKE_CURRENT_BINARY_DIR}
)

install(PROGRAMS ${CMAKE_CURRENT_BINARY_DIR}/${fname}.${MEX_EXTENSION} DESTINATION ${CMAKE_INSTALL_PREFIX})

endfunction(make_mex)

set(MOBJS "intrepid_setJacobian;intrepid_setJacobianInv;intrepid_setJacobianDet;intrepid_getNumCubaturePoints;intrepid_getCubature;intrepid_getBasisValues;intrepid_computeCellMeasure;intrepid_HGRADtransformGRAD;intrepid_HGRADtransformVALUE;intrepid_multiplyMeasure;intrepid_integrate;intrepid_mapToPhysicalFrame;intrepid_mapToReferenceFrame;intrepid_scalarMultiplyDataField;intrepid_scalarMultiplyDataData;intrepid_dataIntegral;intrepid_evaluate;intrepid_multiplyVectorDataField;intrepid_dotMultiplyDataField;intrepid_vectorMultiplyDataField;intrepid_dotMultiplyDataData;intrepid_computeEdgeMeasure;intrepid_computeFaceMeasure;intrepid_getCellDeviatoricMat;intrepid_getCellVolumetricMat;intrepid_getPhysicalSideNormals;intrepid_mapToReferenceSubcell;intrepid_tensorMultiplyDataData;intrepid_tensorMultiplyDataField;defGrad;evaluateVectorField;evaluateVectorGradField;externalForceElastostaticsTL;geometricBmat;intrepid_det;intrepid_inverse;intrepid_transpose;materialBmat;strainEulerianLagrangian;stress;tangentStiffnessElastostaticsTL;tensorMultiplyDataField;myMatVecProductDataField;myMatVecProductDataData")

# dummy targets to build up dependencies
#add_custom_target(m2i_helpers
# ALL
# COMMAND # left intentionally blank
# DEPENDS ${CMAKE_CURRENT_BINARY_DIR}/objs/m2i_helpers.o
# )
foreach(fname ${MOBJS})
make_mex(${fname})
# builds dependency chain
add_custom_target(${fname}
ALL
COMMAND # left intentionally blank
#DEPENDS m2i_helpers ${fname}.${MEX_EXTENSION}
DEPENDS ${fname}.${MEX_EXTENSION}
)
make_mex(${fname})
endforeach()

if(APPLE)
message("\"*.dylib was built for newer macOS version (*.*) than being linked (10.9)\" type warnings can be safely ignored. MEX compiler specifies a -mmacosx-min-version=10.9, which can not be overridden.")
endif(APPLE)

install(TARGETS ${MOBJS}
DESTINATION ${CMAKE_INSTALL_PREFIX}
)