Supplemental code for Pol1 termination MS. This repository provides step-by-step guidance to reproduce data in the MS. It is divided into two stages (cluster and desktop) according to computational demand. All steps require git and conda installed
Clone this repository
git clone git@github.com:tturowski/Pol1_termination_MS.git
Create and activate conda environment (you can use mamba instead)
conda env create -f envs/snakemake.yml
conda activate snakemake
Run SnakeMake file to process raw files (-c determines number of CPUs to use)
snakemake -c64 --use-conda -s SM_CRACprocessing3end_all.py
NOTE: Very first run of the SnakeMake file SM_CRACprocessing3end_all.py will initialize new conda environments. This may take a several minutes.