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Using TTClust on Google Colab #29
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That's interesting, I never tried to run it on google colab. Kind regards, |
I attached the errors, and the colab notebook I was trying in. Execuse my I'm a biggener in Google colab, but I just wanted to get advantage of higher computational power than I have, which I discovered that I need when I had a long simulation with such a large size that my laptop crashed, not the same case as it was with shorter and smaller simulations. https://colab.research.google.com/drive/1rEOfmEDhOrYD7gpnledx7JVqKPrrn7Jz?usp=sharing Thanks again for your help and for your valuable contributed tools, |
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I tried this, and it looks like it worked, however another error is thrown: I think that is related to the size of the trajectory which is about 1.69 GB, I don't know how can I use TTClust on a trajectory of that size, any suggestions? Thanks in advance, |
I'm not sure if it is linked to collab or not, but it should not require so much memory. I know that I have to work on memory optimisation, but unfortunately I will not have time to do that before a few weeks.... In the meantime, If you have the water in your trajectory you can first remove it, or if you have a lot of frames, you can skip some frames. |
Thanks so much, it eventually worked :). It's now running on colab. Thanks again, |
Good to know :-) Thibault. |
Hi,
Can TTClust be used on Google Colab? if so how can I install it and get it working? I tried installing condacolab, and then using the following command :
!mamba install -c tubiana -c conda-forge ttclust
to install TTclust, but after that when I tried to run a TTclust command , it just throws errors, so I wonder if there's a method I can use it on Colab?Thanks in advance
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