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Conda environment file
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@michelzade
michelzade committed Nov 4, 2020
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name: OpenTUMFlex
channels:
- conda-forge
- defaults
dependencies:
- appdirs=1.4.4=pyh9f0ad1d_0
- blosc=1.20.1=ha925a31_0
- bzip2=1.0.8=he774522_3
- ca-certificates=2020.6.20=hecda079_0
- certifi=2020.6.20=py39h467e6f4_2
- cycler=0.10.0=py_2
- freetype=2.10.4=h546665d_0
- glpk=4.65=h2fa13f4_1002
- hdf5=1.10.6=nompi_h89124ea_1110
- icu=67.1=h33f27b4_0
- intel-openmp=2020.2=254
- joblib=0.17.0=py_0
- jpeg=9d=h8ffe710_0
- kiwisolver=1.3.1=py39h2e07f2f_0
- krb5=1.17.1=hc04afaa_3
- libblas=3.8.0=20_mkl
- libcblas=3.8.0=20_mkl
- libclang=10.0.1=default_hf44288c_1
- libcurl=7.71.1=h4b64cdc_8
- liblapack=3.8.0=20_mkl
- libpng=1.6.37=h1d00b33_2
- libssh2=1.9.0=hb06d900_5
- libtiff=4.1.0=hc10be44_6
- lz4-c=1.9.2=h62dcd97_2
- m2w64-gcc-libgfortran=5.3.0=6
- m2w64-gcc-libs=5.3.0=7
- m2w64-gcc-libs-core=5.3.0=7
- m2w64-gmp=6.1.0=2
- m2w64-libwinpthread-git=5.0.0.4634.697f757=2
- matplotlib=3.3.2=py39hde42818_1
- matplotlib-base=3.3.2=py39h62a766e_1
- mkl=2020.2=256
- mock=4.0.2=py39hde42818_1
- msys2-conda-epoch=20160418=1
- nose=1.3.7=py_1006
- numexpr=2.7.1=py39h6ab05e5_3
- numpy=1.19.2=py39h5659d19_1
- olefile=0.46=pyh9f0ad1d_1
- openssl=1.1.1h=he774522_0
- pandas=1.1.4=py39h2e25243_0
- patsy=0.5.1=py_0
- pillow=8.0.1=py39h13cbe5d_0
- pip=20.2.4=py_0
- ply=3.11=py_1
- pyomo=5.7.1=py39hb0d2dfa_1
- pyparsing=2.4.7=pyh9f0ad1d_0
- pyqt=5.12.3=py39hb0d2dfa_4
- pytables=3.6.1=py39h4b3cac5_3
- python=3.9.0=h408a966_4_cpython
- python-dateutil=2.8.1=py_0
- python_abi=3.9=1_cp39
- pytz=2020.4=pyhd8ed1ab_0
- pyutilib=6.0.0=pyh9f0ad1d_0
- qt=5.12.9=hb2cf2c5_0
- scipy=1.5.3=py39hc0c34ad_0
- seaborn=0.11.0=h57928b3_1
- seaborn-base=0.11.0=pyhd8ed1ab_1
- setuptools=49.6.0=py39h467e6f4_2
- six=1.15.0=pyh9f0ad1d_0
- sqlite=3.33.0=he774522_1
- statsmodels=0.12.1=py39h5d4886f_1
- tk=8.6.10=he774522_1
- tornado=6.1=py39hb82d6ee_0
- tqdm=4.51.0=pyh9f0ad1d_0
- tzdata=2020d=h516909a_0
- vc=14.1=h869be7e_1
- vs2015_runtime=14.16.27012=h30e32a0_2
- wheel=0.35.1=pyh9f0ad1d_0
- wincertstore=0.2=py39hde42818_1005
- xlrd=1.2.0=pyh9f0ad1d_1
- xz=5.2.5=h62dcd97_1
- zlib=1.2.11=h62dcd97_1010
- zstd=1.4.5=h1f3a1b7_2
- pip:
- pyqt5-sip==4.19.18
- pyqtchart==5.12
- pyqtwebengine==5.12.1

2 comments on commit 8c6a3ad

@azamatm
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@michelzade

Following the installation instructions, I can't create environment and getting this error:
(I'm using MacOS)

conda env create -f environment_v1.0.yml 
Collecting package metadata (repodata.json): done
Solving environment: failed

ResolvePackageNotFound: 
  - glpk==4.65=h2fa13f4_1002
  - zstd==1.4.5=h1f3a1b7_2
  - vc==14.1=h869be7e_1
  - tk==8.6.10=he774522_1
  - krb5==1.17.1=hc04afaa_3
  - qt==5.12.9=hb2cf2c5_0
  - pandas==1.1.4=py39h2e25243_0
  - setuptools==49.6.0=py39h467e6f4_2
  - bzip2==1.0.8=he774522_3
  - intel-openmp==2020.2=254
  - pyqt==5.12.3=py39hb0d2dfa_4
  - python==3.9.0=h408a966_4_cpython
  - freetype==2.10.4=h546665d_0
  - zlib==1.2.11=h62dcd97_1010
  - xz==5.2.5=h62dcd97_1
  - lz4-c==1.9.2=h62dcd97_2
  - libtiff==4.1.0=hc10be44_6
  - libssh2==1.9.0=hb06d900_5
  - m2w64-libwinpthread-git==5.0.0.4634.697f757=2
  - msys2-conda-epoch==20160418=1
  - tornado==6.1=py39hb82d6ee_0
  - m2w64-gcc-libs==5.3.0=7
  - certifi==2020.6.20=py39h467e6f4_2
  - kiwisolver==1.3.1=py39h2e07f2f_0
  - m2w64-gcc-libgfortran==5.3.0=6
  - m2w64-gcc-libs-core==5.3.0=7
  - matplotlib-base==3.3.2=py39h62a766e_1
  - numpy==1.19.2=py39h5659d19_1
  - m2w64-gmp==6.1.0=2
  - pillow==8.0.1=py39h13cbe5d_0
  - openssl==1.1.1h=he774522_0
  - icu==67.1=h33f27b4_0
  - statsmodels==0.12.1=py39h5d4886f_1
  - pyomo==5.7.1=py39hb0d2dfa_1
  - libclang==10.0.1=default_hf44288c_1
  - blosc==1.20.1=ha925a31_0
  - pytables==3.6.1=py39h4b3cac5_3
  - sqlite==3.33.0=he774522_1
  - numexpr==2.7.1=py39h6ab05e5_3
  - seaborn==0.11.0=h57928b3_1
  - mkl==2020.2=256
  - libpng==1.6.37=h1d00b33_2
  - hdf5==1.10.6=nompi_h89124ea_1110
  - vs2015_runtime==14.16.27012=h30e32a0_2
  - jpeg==9d=h8ffe710_0
  - scipy==1.5.3=py39hc0c34ad_0
  - wincertstore==0.2=py39hde42818_1005
  - libcurl==7.71.1=h4b64cdc_8

According to this thread, it might be resolved by adding --no-builds to the conda env export command.
That is: conda env export --no-builds > environment.yml

Or maybe you know another solution to this issue?

Thanks!
Azamat

@azamatm
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@azamatm azamatm commented on 8c6a3ad Dec 24, 2020 •
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@michelzade

In the end, I manually deleted the build information directly in .yml file

Environment still didn't solve with a few packages still having the same problem (even without the build info)

I tried to comment them out anyway, and finally was able to create the environment.

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