uBiome Tools Repository
Please add your tools here, and edit this file to keep a directory of scripts, programs, templates, or anything else you find useful for manipulating or analyzing uBiome information.
If you are new to uBiome taxonomy files, read our Getting Started document
ubiome.py: Python module Compare any two uBiome samples to find unique taxa (bacteria) or to show the difference in counts. If you have a Mac, the script works without installing anything else.
uBiome_compare_samples Given two samples, output all the differences, including the difference in count_norm
uBiome_sample_unique Given two samples, output which rows are the uniquely found in one but not the other.
convert_json_files_to_csv Convert all JSON files in a directory to CSV files, suitable for reading in Excel or use with the other functions here.