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Issue when finding the start altering variants from a node #583

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zhuchcn opened this issue Oct 11, 2022 · 0 comments · Fixed by #581
Closed

Issue when finding the start altering variants from a node #583

zhuchcn opened this issue Oct 11, 2022 · 0 comments · Fixed by #581
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zhuchcn commented Oct 11, 2022

When finding the start altering variants from a node, the end position of start codon here should be start_indices[-1] + 1 instead of +3. This is amino acid not nucleotides

https://github.com/uclahs-cds/private-moPepGen/blob/7324db4f6949a5c46cf3efdd9f9cd8f756b3cdc4/moPepGen/svgraph/PeptideVariantGraph.py#L1000
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