filterOutIN: fix regex

R/filterings.R

@@ -156,11 +156,15 @@ filterOutIn <- function(dataSet,
   ## only list filter if listName is present
   if (length(listName) != 0) {
     listIndex <- which(colnames(filteredData) %in% listName)
+  } else {
+    listIndex <- NULL
   }
 
   ## only regex filter if regexName is present
   if (length(regexName) != 0) {
     regexIndex <- grep(paste(regexName, collapse = "|"), colnames(filteredData))
+  } else {
+    regexIndex <- NULL
   }
 
   ## combine protein names from list and regex filters

R/globals.R

@@ -1,21 +1,3 @@
-##
-## msDiaLogue: Analysis + Visuals for Data Indep. Aquisition Mass Spectrometry Data
-## Copyright (C) 2024  Shiying Xiao, Timothy Moore and Charles Watt
-## Shiying Xiao <shiying.xiao@uconn.edu>
-##
-## This file is part of the R package msDiaLogue.
-##
-## The R package msDiaLogue is free software: You can redistribute it and/or
-## modify it under the terms of the GNU General Public License as published by
-## the Free Software Foundation, either version 3 of the License, or any later
-## version (at your option). See the GNU General Public License at
-## <https://www.gnu.org/licenses/> for details.
-##
-## The R package wdnet is distributed in the hope that it will be useful,
-## but WITHOUT ANY WARRANTY without even the implied warranty of
-## MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.
-##
-
 # Generated by roxyglobals: do not edit by hand
 
 utils::globalVariables(c(

docs/pkgdown.yml

@@ -3,7 +3,7 @@ pkgdown: 2.0.7
 pkgdown_sha: ~
 articles:
   usage_template: usage_template.html
-last_built: 2024-03-04T20:10Z
+last_built: 2024-03-04T21:28Z
 urls:
   reference: https://uconn-scs.github.io/msDiaLogue/reference
   article: https://uconn-scs.github.io/msDiaLogue/articles