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@uf-icbr-bioinformatics

UF ICBR Bioinformatics Core

Open-source software developed by the UF ICBR Bioinformatics Core

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  1. bioscripts bioscripts Public

    A collection of stand-alone scripts for bioinformatics

    Python 4 2

  2. submit submit Public

    Generalized submit command for slurm / moabs

    Python 3 1

  3. csvutils csvutils Public

    Utilities for working with delimited (CSV) files.

    Python 2

  4. ba3p ba3p Public

    Bacterial alignment, assembly, and annotation pipelines

    Python 1

  5. fastascripts fastascripts Public

    This repository contains scripts for dealing with FASTA files and identifies external scripts as well

    Python 1

  6. dasa dasa Public

    Differential ATAC-Seq analysis

    Python 1

Repositories

Showing 10 of 20 repositories
  • methylmapper Public
    uf-icbr-bioinformatics/methylmapper’s past year of commit activity
    Python 0 0 0 0 Updated Apr 5, 2024
  • ICBR-NGS-tools Public
    uf-icbr-bioinformatics/ICBR-NGS-tools’s past year of commit activity
    Python 1 MIT 0 0 0 Updated Feb 4, 2024
  • dasa Public

    Differential ATAC-Seq analysis

    uf-icbr-bioinformatics/dasa’s past year of commit activity
    Python 1 MIT 0 0 0 Updated Jan 22, 2024
  • submit Public

    Generalized submit command for slurm / moabs

    uf-icbr-bioinformatics/submit’s past year of commit activity
    Python 3 GPL-3.0 1 0 0 Updated Dec 8, 2023
  • csvutils Public

    Utilities for working with delimited (CSV) files.

    uf-icbr-bioinformatics/csvutils’s past year of commit activity
    Python 2 GPL-3.0 0 0 0 Updated Jul 19, 2023
  • bioscripts Public

    A collection of stand-alone scripts for bioinformatics

    uf-icbr-bioinformatics/bioscripts’s past year of commit activity
    Python 4 GPL-3.0 2 0 0 Updated Jul 19, 2023
  • GenoMaker Public

    Declarative language for complex genomic analysis

    uf-icbr-bioinformatics/GenoMaker’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Jul 18, 2023
  • tenX Public

    User-friendly script to run the cellranger/seurat analysis pipeline for 10X scRNA-seq experiments

    uf-icbr-bioinformatics/tenX’s past year of commit activity
    Shell 0 0 0 0 Updated Nov 25, 2022
  • FOLD Public
    uf-icbr-bioinformatics/FOLD’s past year of commit activity
    Python 0 0 0 0 Updated Sep 29, 2022
  • BIutils Public

    Utilities used by several uf-icbr-bioinformatics packages

    uf-icbr-bioinformatics/BIutils’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Jun 28, 2022
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