feature/hera_port This commit references #1.

Baseline the batch submission wrappers per request of
global workflow group.  These are used by the
chgres script.  Previously, they resided in the
glopara home directories on each machine.

util/sub_slurm

@@ -0,0 +1,144 @@
+#!/bin/ksh
+set -x
+usage="\
+Usage:  $0 [options] executable [args]
+      where the options are:
+      -a account        account (default: none)
+      -b binding        run smt binding or not (default:NO)
+      -d dirin          initial directory (default: cwd)
+      -e envars         copy comma-separated environment variables
+      -g group          group name
+      -i                append standard input to command file
+      -j jobname        specify jobname (default: executable basename)
+      -m machine        machine on which to run (default: current)
+      -n                write command file to stdout rather than submitting it
+      -o output         specify output file (default: jobname.out)
+      -p procs[/nodes[/ppreq]
+                        number of MPI tasks and optional nodes or Bblocking and
+                        ppreq option (N or S) (defaults: serial, Bunlimited, S)
+      -q queue[/qpreq]  queue name and optional requirement, e.g. dev/P
+                        (defaults: 1 if serial or dev if parallel and none)
+                        (queue 3 or 4 is dev or prod with twice tasks over ip)
+                        (options: P=parallel, B=bigmem, b=batch)
+      -r rmem[/rcpu]    resources memory and cpus/task (default: '1024 mb', 1)
+      -t timew          wall time limit in [[hh:]mm:]ss format (default: 900)
+      -u userid         userid to run under (default: self)
+      -v                verbose mode
+      -w when           when to run, in yyyymmddhh[mm], +hh[mm], thh[mm], or
+                        Thh[mm] (full, incremental, today or tomorrow) format
+                        (default: now)
+Function:  This command submits a job to the batch queue."
+subcmd="$*"
+stdin=NO
+nosub=NO
+account=""
+binding="NO"
+dirin=""
+envars="para"
+group=""
+jobname=""
+machine=""
+output=""
+procs=0
+nodes=""
+ppreq="N"
+queue=""
+qpreq=""
+rmem="1200"
+rcpu="1"
+timew="900"
+userid=""
+verbose=NO
+when=""
+while getopts a:b:d:e:g:ij:m:no:p:q:r:t:u:vw: opt;do
+  case $opt in
+    a) account="$OPTARG";;
+    b) binding="$OPTARG";;
+    d) dirin="$OPTARG";;
+    e) envars="$OPTARG";;
+    g) group="$OPTARG";;
+    i) stdin=YES;;
+    j) jobname=$OPTARG;;
+    m) machine="$OPTARG";;
+    n) nosub=YES;;
+    o) output=$OPTARG;;
+    p) procs=$(echo $OPTARG/|cut -d/ -f1);nodes=$(echo $OPTARG/|cut -d/ -f2);ppreq=$(echo $OPTARG/|cut -d/ -f3);;
+    q) queue=$(echo $OPTARG/|cut -d/ -f1);qpreq=$(echo $OPTARG/|cut -d/ -f2);;
+    r) rmem=$(echo $OPTARG/|cut -d/ -f1);rcpu=$(echo $OPTARG/|cut -d/ -f2);;
+    t) timew=$OPTARG;;
+    u) userid=$OPTARG;;
+    v) verbose=YES;;
+    w) when=$OPTARG;;
+    \?) echo $0: invalid option >&2;echo "$usage" >&2;exit 1;;
+  esac
+done
+shift $(($OPTIND-1))
+if [[ $# -eq 0 ]];then
+  echo $0: missing executable name >&2;echo "$usage" >&2;exit 1
+fi
+exec=$1
+if [[ ! -s $exec ]]&&which $exec >/dev/null 2>&1;then
+  exec=$(which $exec)
+fi
+shift
+args="$*"
+bn=$(basename $exec)
+jobname=${jobname:-$bn}
+output=${output:-$jobname.out}
+myuser=$LOGNAME
+myhost=$(hostname)
+
+DATA=${DATA:-/scratch4/NCEPDEV/stmp4/$LOGNAME/sub}
+mkdir -p $DATA
+
+partition=${partition:-service}
+queue=${queue:-batch}
+timew=${timew:-01:20:00}
+task_node=${procs:-12}
+ntasks=$((nodes*task_node))
+envars=$envars
+
+#export TZ=GMT
+export TZ="America/New_York"
+cfile=$DATA/sub$$
+> $cfile
+echo "#!/bin/ksh         "                     >> $cfile
+echo "#SBATCH -A $account"                     >> $cfile
+echo "#SBATCH -o $output"                      >> $cfile
+echo "#SBATCH -e $output"                      >> $cfile
+echo "#SBATCH -J $jobname"                     >> $cfile
+echo "#SBATCH -q $queue"                       >> $cfile
+echo "#SBATCH -p $partition"                   >> $cfile
+##echo "#SBATCH -v $envars"                    >> $cfile
+echo "#SBATCH --nodes=$nodes --ntasks=$ntasks" >> $cfile
+echo "#SBATCH -t $timew"                       >> $cfile
+echo "/bin/ksh --login -x $exec $args"         >> $cfile
+
+if [[ $stdin = YES ]];then
+  cat
+fi >>$cfile
+if [[ $nosub = YES ]];then
+  cat $cfile
+  exit
+elif [[ $verbose = YES ]];then
+  set -x
+  cat $cfile
+fi
+
+sbatch=${sbatch:-/apps/slurm/default/bin/sbatch}
+
+ofile=$DATA/subout$$
+>$ofile
+chmod 777 $ofile
+$sbatch $cfile >$ofile
+rc=$?
+cat $ofile
+if [[ -w $SUBLOG ]];then
+  jobn=$(grep -i submitted $ofile|head -n1|cut -d\" -f2)
+# date -u +"%Y%m%d%H%M%S : $subcmd : $jobn" >>$SUBLOG
+  date +"%Y%m%d%H%M%S : $subcmd : $jobn" >>$SUBLOG
+fi
+#exit
+#rm $cfile $ofile
+[[ $MKDATA = YES ]] && rmdir $DATA
+exit $rc