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[develop] Changes for Derecho, a new platform #894

Merged
merged 16 commits into from
Sep 19, 2023
Merged
10 changes: 9 additions & 1 deletion etc/lmod-setup.csh
Original file line number Diff line number Diff line change
Expand Up @@ -6,7 +6,7 @@ Usage: source etc/lmod-setup.csh PLATFORM

OPTIONS:
PLATFORM - name of machine you are building on
(e.g. cheyenne | hera | jet | orion | wcoss2 )
(e.g. cheyenne | derecho | hera | jet | orion | wcoss2 )
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EOF_USAGE
exit 1
else
Expand Down Expand Up @@ -40,6 +40,14 @@ else if ( "$L_MACHINE" == singularity ) then
else if ( "$L_MACHINE" == gaea ) then
source /lustre/f2/dev/role.epic/contrib/Lmod_init.csh

else if ( "$L_MACHINE" == derecho ) then
module purge > /dev/null
setenv ENV "/glade/u/apps/derecho/23.06/spack/opt/spack/lmod/8.7.20/gcc/7.5.0/pdxb/lmod/lmod/init/csh"
source $ENV
setenv BASH_ENV "/glade/u/apps/derecho/23.06/spack/opt/spack/lmod/8.7.20/gcc/7.5.0/pdxb/lmod/lmod/init/bash"
setenv PATH "$MODULESHOME/libexec:$MODULESHOME/init/ksh_funcs:$PATH"
module --initial_load --no_redirect restore

else if ( "$L_MACHINE" == odin ) then
module unload modules
unset -f module
Expand Down
11 changes: 10 additions & 1 deletion etc/lmod-setup.sh
Original file line number Diff line number Diff line change
Expand Up @@ -7,7 +7,7 @@ Usage: source etc/lmod-setup.sh PLATFORM

OPTIONS:
PLATFORM - name of machine you are building on
(e.g. cheyenne | hera | jet | orion | wcoss2 )
(e.g. derecho | hera | jet | orion | wcoss2 )
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EOF_USAGE
exit 1
else
Expand Down Expand Up @@ -47,6 +47,15 @@ elif [ "$L_MACHINE" = singularity ]; then
elif [ "$L_MACHINE" = gaea ]; then
source /lustre/f2/dev/role.epic/contrib/Lmod_init.sh

elif [ "$L_MACHINE" = derecho ]; then
module purge 2>/dev/null

export BASH_ENV=/glade/u/apps/derecho/23.06/spack/opt/spack/lmod/8.7.20/gcc/7.5.0/pdxb/lmod/lmod/init/bash
source $BASH_ENV
export LMOD_SYSTEM_DEFAULT_MODULES="ncarenv:craype/2.7.20"
export PATH=$MODULESHOME/libexec:$MODULESHOME/init/ksh_funcs:$PATH
module --initial_load --no_redirect restore

elif [ "$L_MACHINE" = odin ]; then
module unload modules
unset -f module
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34 changes: 34 additions & 0 deletions modulefiles/build_derecho_intel.lua
Original file line number Diff line number Diff line change
@@ -0,0 +1,34 @@
help([[
This module loads libraries for building the UFS SRW App on
the CISL machine Cheyenne using Intel-2022.1
]])

whatis([===[Loads libraries needed for building the UFS SRW App on Cheyenne ]===])

load(pathJoin("cmake", os.getenv("cmake_ver") or "3.26.3"))
load(pathJoin("ncarenv", os.getenv("ncarenv_ver") or "23.06"))
load(pathJoin("craype", os.getenv("craype_ver") or "2.7.20"))

unload("netcdf")
unload("hdf5")
unload("intel")

prepend_path("MODULEPATH","/glade/work/epicufsrt/contrib/derecho/hpc-stack/intel-classic-2023.0.0/modulefiles/stack")
load(pathJoin("hpc", os.getenv("hpc_ver") or "1.2.0"))
load(pathJoin("hpc-intel-classic", os.getenv("hpc_intel_classic_ver") or "2023.0.0"))
load(pathJoin("hpc-cray-mpich", os.getenv("hpc_cray_mpich_ver") or "8.1.25"))

load(pathJoin("ncarcompilers", os.getenv("ncarcompilers_ver") or "1.0.0"))
load(pathJoin("mkl", os.getenv("mkl_ver") or "2023.0.0"))

load("srw_common")

setenv("CC","cc")
setenv("FC","ftn")
setenv("CXX","CC")

setenv("CMAKE_C_COMPILER","cc")
setenv("CMAKE_CXX_COMPILER","CC")
setenv("CMAKE_Fortran_COMPILER","ftn")
setenv("CMAKE_Platform","derecho.intel")

14 changes: 7 additions & 7 deletions modulefiles/srw_common.lua
Original file line number Diff line number Diff line change
@@ -1,12 +1,12 @@
load("jasper/2.0.25")
load("zlib/1.2.11")
load_any("png/1.6.35", "libpng/1.6.37")
load("libpng/1.6.37")

load_any("netcdf/4.7.4", "netcdf-c/4.7.4")
load_any("netcdf/4.7.4", "netcdf-fortran/4.5.4")
load_any("pio/2.5.7", "parallelio/2.5.2")
load_any("esmf/8.3.0b09", "esmf/8.2.0")
load("fms/2022.04")
load_any("netcdf/4.9.2", "netcdf-c/4.9.2")
load_any("netcdf/4.9.2", "netcdf-fortran/4.6.0")
load_any("pio/2.5.10", "parallelio/2.5.10")
load_any("esmf/8.4.2", "esmf/8.5.0")
load("fms/2023.01")

load("bufr/11.7.0")
load("bacio/2.4.1")
Expand All @@ -19,7 +19,7 @@ load("w3emc/2.9.2")

load_any("gftl-shared/v1.5.0", "gftl-shared/1.5.0")
load_any("yafyaml/v0.5.1", "yafyaml/0.5.1")
load_any("mapl/2.22.0-esmf-8.3.0b09", "mapl/2.11.0-esmf-8.2.0")
load_any("mapl/2.35.2-esmf-8.4.2")

load("nemsio/2.5.4")
load("sfcio/1.4.1")
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3 changes: 3 additions & 0 deletions modulefiles/tasks/derecho/aqm_ics.local.lua
Original file line number Diff line number Diff line change
@@ -0,0 +1,3 @@
load(pathJoin("cmake", os.getenv("cmake_ver") or "3.22.0"))
load("nco/4.9.5")
load("miniconda_regional_workflow_cmaq")
3 changes: 3 additions & 0 deletions modulefiles/tasks/derecho/aqm_lbcs.local.lua
Original file line number Diff line number Diff line change
@@ -0,0 +1,3 @@
load(pathJoin("cmake", os.getenv("cmake_ver") or "3.22.0"))
load("nco/4.9.5")
load("miniconda_regional_workflow_cmaq")
2 changes: 2 additions & 0 deletions modulefiles/tasks/derecho/fire_emission.local.lua
Original file line number Diff line number Diff line change
@@ -0,0 +1,2 @@
load("ncarenv")
load("miniconda_regional_workflow_cmaq")
Original file line number Diff line number Diff line change
@@ -0,0 +1,6 @@
unload("python")
load("conda")
prepend_path("MODULEPATH","/glade/work/epicufsrt/contrib/derecho/miniconda3/modulefiles")
load(pathJoin("miniconda3", os.getenv("miniconda3_ver") or "4.12.0"))

setenv("SRW_ENV", "regional_workflow_cmaq")
4 changes: 4 additions & 0 deletions modulefiles/tasks/derecho/nexus_emission.local.lua
Original file line number Diff line number Diff line change
@@ -0,0 +1,4 @@
load("nco/5.0.6")

load("ncarenv")
load("miniconda_regional_workflow_cmaq")
2 changes: 2 additions & 0 deletions modulefiles/tasks/derecho/nexus_gfs_sfc.local.lua
Original file line number Diff line number Diff line change
@@ -0,0 +1,2 @@
load("ncarenv")
load("miniconda_regional_workflow_cmaq")
3 changes: 3 additions & 0 deletions modulefiles/tasks/derecho/nexus_post_split.local.lua
Original file line number Diff line number Diff line change
@@ -0,0 +1,3 @@
load(pathJoin("nco", os.getenv("nco_ver") or "5.0.6"))
load("ncarenv")
load("miniconda_regional_workflow_cmaq")
5 changes: 5 additions & 0 deletions modulefiles/tasks/derecho/plot_allvars.local.lua
Original file line number Diff line number Diff line change
@@ -0,0 +1,5 @@
unload("python")
prepend_path("MODULEPATH","/glade/work/epicufsrt/contrib/miniconda3/modulefiles")
load(pathJoin("miniconda3", os.getenv("miniconda3_ver") or "4.12.0"))

setenv("SRW_ENV", "regional_workflow")
2 changes: 2 additions & 0 deletions modulefiles/tasks/derecho/point_source.local.lua
Original file line number Diff line number Diff line change
@@ -0,0 +1,2 @@
load("ncarenv")
load("miniconda_regional_workflow_cmaq")
2 changes: 2 additions & 0 deletions modulefiles/tasks/derecho/pre_post_stat.local.lua
Original file line number Diff line number Diff line change
@@ -0,0 +1,2 @@
load("nco/4.9.5")
load("miniconda_regional_workflow_cmaq")
5 changes: 5 additions & 0 deletions modulefiles/tasks/derecho/python_srw.lua
Original file line number Diff line number Diff line change
@@ -0,0 +1,5 @@
unload("python")
prepend_path("MODULEPATH","/glade/work/epicufsrt/contrib/derecho/miniconda3/modulefiles")
load(pathJoin("miniconda3", os.getenv("miniconda3_ver") or "4.12.0"))

setenv("SRW_ENV", "workflow_tools")
6 changes: 6 additions & 0 deletions modulefiles/tasks/derecho/run_vx.local.lua
Original file line number Diff line number Diff line change
@@ -0,0 +1,6 @@
--[[
Compiler-specific modules are used for met and metplus libraries
--]]
load(pathJoin("met", os.getenv("met_ver") or "10.1.2"))
load(pathJoin("metplus", os.getenv("metplus_ver") or "4.1.3"))
load("python_srw")
24 changes: 24 additions & 0 deletions modulefiles/wflow_derecho.lua
Original file line number Diff line number Diff line change
@@ -0,0 +1,24 @@
help([[
This module loads python environement for running the UFS SRW App on
on the CISL machine Cheyenne
]])

whatis([===[Loads libraries needed for running the UFS SRW App on Cheyenne ]===])

load("ncarenv")

append_path("MODULEPATH","/glade/work/epicufsrt/contrib/derecho/rocoto/modulefiles")
load("rocoto")

unload("python")

load("set_pythonpath")
prepend_path("MODULEPATH","/glade/work/epicufsrt/contrib/derecho/miniconda3/modulefiles")
load(pathJoin("miniconda3", os.getenv("miniconda3_ver") or "4.12.0"))

if mode() == "load" then
LmodMsgRaw([===[Please do the following to activate conda:
> conda activate workflow_tools
]===])
end

6 changes: 3 additions & 3 deletions tests/README.md
Original file line number Diff line number Diff line change
Expand Up @@ -15,9 +15,9 @@ for the current code in the users ufs-srweather-app directory. It consists of t

Currently, the following configurations are supported:

Machine | Cheyenne | Hera | Jet | Orion | wcoss2 |
------------| ------------|--------|--------|--------|---------|
Compiler(s) | Intel, GNU | Intel | Intel | Intel | Intel |
Machine | Derecho | Cheyenne | Hera | Jet | Orion | wcoss2 |
------------|---------|-------------|--------|--------|--------|---------|
Compiler(s) | Intel | Intel, GNU | Intel | Intel | Intel | Intel |

The CMake build is done in the ``build_${compiler}`` directory.
The executables for each build are installed under the ``bin_${compiler}`` directory.
Expand Down
55 changes: 55 additions & 0 deletions tests/WE2E/machine_suites/comprehensive.derecho
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@@ -0,0 +1,55 @@
community
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custom_ESGgrid
custom_GFDLgrid__GFDLgrid_USE_NUM_CELLS_IN_FILENAMES_eq_FALSE
custom_GFDLgrid
deactivate_tasks
grid_CONUS_25km_GFDLgrid_ics_FV3GFS_lbcs_FV3GFS_suite_GFS_v16
grid_CONUS_3km_GFDLgrid_ics_FV3GFS_lbcs_FV3GFS_suite_RRFS_v1beta
grid_RRFS_AK_13km_ics_FV3GFS_lbcs_FV3GFS_suite_GFS_v16_plot
grid_RRFS_AK_3km_ics_FV3GFS_lbcs_FV3GFS_suite_HRRR
grid_RRFS_CONUS_13km_ics_FV3GFS_lbcs_FV3GFS_suite_RAP
grid_RRFS_CONUS_13km_ics_FV3GFS_lbcs_FV3GFS_suite_GFS_v16_plot
grid_RRFS_CONUS_13km_ics_FV3GFS_lbcs_FV3GFS_suite_HRRR
grid_RRFS_CONUS_13km_ics_FV3GFS_lbcs_FV3GFS_suite_RRFS_v1beta
grid_RRFS_CONUS_25km_ics_FV3GFS_lbcs_FV3GFS_suite_GFS_v15p2
grid_RRFS_CONUS_25km_ics_FV3GFS_lbcs_FV3GFS_suite_GFS_v16_plot
grid_RRFS_CONUS_25km_ics_FV3GFS_lbcs_FV3GFS_suite_GFS_v17_p8_plot
grid_RRFS_CONUS_25km_ics_FV3GFS_lbcs_FV3GFS_suite_HRRR
grid_RRFS_CONUS_25km_ics_FV3GFS_lbcs_FV3GFS_suite_RAP
grid_RRFS_CONUS_25km_ics_FV3GFS_lbcs_FV3GFS_suite_RRFS_v1beta
grid_RRFS_CONUS_25km_ics_FV3GFS_lbcs_RAP_suite_RAP
grid_RRFS_CONUS_25km_ics_GSMGFS_lbcs_GSMGFS_suite_GFS_v15p2
grid_RRFS_CONUS_25km_ics_NAM_lbcs_NAM_suite_GFS_v16
grid_RRFS_CONUS_25km_ics_NAM_lbcs_NAM_suite_RRFS_v1beta
grid_RRFS_CONUS_3km_ics_FV3GFS_lbcs_FV3GFS_suite_GFS_v15p2
grid_RRFS_CONUS_3km_ics_FV3GFS_lbcs_FV3GFS_suite_GFS_v15_thompson_mynn_lam3km
grid_RRFS_CONUS_3km_ics_FV3GFS_lbcs_FV3GFS_suite_GFS_v16
grid_RRFS_CONUS_3km_ics_FV3GFS_lbcs_FV3GFS_suite_HRRR
grid_RRFS_CONUS_3km_ics_FV3GFS_lbcs_FV3GFS_suite_RRFS_v1beta
grid_RRFS_CONUScompact_13km_ics_FV3GFS_lbcs_FV3GFS_suite_GFS_v16
grid_RRFS_CONUScompact_13km_ics_HRRR_lbcs_RAP_suite_HRRR
grid_RRFS_CONUScompact_13km_ics_HRRR_lbcs_RAP_suite_RRFS_v1beta
grid_RRFS_CONUScompact_25km_ics_FV3GFS_lbcs_FV3GFS_suite_GFS_v16
grid_RRFS_CONUScompact_25km_ics_HRRR_lbcs_HRRR_suite_HRRR
grid_RRFS_CONUScompact_25km_ics_HRRR_lbcs_RAP_suite_RRFS_v1beta
grid_RRFS_CONUScompact_3km_ics_FV3GFS_lbcs_FV3GFS_suite_GFS_v16
grid_RRFS_CONUScompact_3km_ics_HRRR_lbcs_RAP_suite_HRRR
grid_RRFS_CONUScompact_3km_ics_HRRR_lbcs_RAP_suite_RRFS_v1beta
grid_RRFS_NA_13km_ics_FV3GFS_lbcs_FV3GFS_suite_RAP
grid_SUBCONUS_Ind_3km_ics_FV3GFS_lbcs_FV3GFS_suite_WoFS_v0
grid_SUBCONUS_Ind_3km_ics_HRRR_lbcs_HRRR_suite_HRRR
grid_SUBCONUS_Ind_3km_ics_HRRR_lbcs_RAP_suite_WoFS_v0
grid_SUBCONUS_Ind_3km_ics_NAM_lbcs_NAM_suite_GFS_v16
grid_SUBCONUS_Ind_3km_ics_RAP_lbcs_RAP_suite_RRFS_v1beta_plot
GST_release_public_v1
MET_ensemble_verification_only_vx
MET_verification_only_vx
nco
nco_ensemble
nco_grid_RRFS_CONUS_13km_ics_FV3GFS_lbcs_FV3GFS_suite_GFS_v16
nco_grid_RRFS_CONUS_25km_ics_FV3GFS_lbcs_FV3GFS_timeoffset_suite_GFS_v16
nco_grid_RRFS_CONUS_3km_ics_FV3GFS_lbcs_FV3GFS_suite_GFS_v15_thompson_mynn_lam3km
nco_grid_RRFS_CONUScompact_25km_ics_HRRR_lbcs_RAP_suite_HRRR
pregen_grid_orog_sfc_climo
specify_EXTRN_MDL_SYSBASEDIR_ICS_LBCS
specify_template_filenames
10 changes: 10 additions & 0 deletions tests/WE2E/machine_suites/coverage.derecho
Original file line number Diff line number Diff line change
@@ -0,0 +1,10 @@
community
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grid_RRFS_CONUScompact_13km_ics_HRRR_lbcs_RAP_suite_RRFS_v1beta
grid_RRFS_CONUS_13km_ics_FV3GFS_lbcs_FV3GFS_suite_RAP
grid_RRFS_CONUS_13km_ics_FV3GFS_lbcs_FV3GFS_suite_HRRR
grid_RRFS_CONUS_3km_ics_FV3GFS_lbcs_FV3GFS_suite_GFS_v15_thompson_mynn_lam3km
grid_RRFS_CONUScompact_25km_ics_HRRR_lbcs_HRRR_suite_HRRR
grid_RRFS_CONUScompact_3km_ics_HRRR_lbcs_RAP_suite_RRFS_v1beta
grid_SUBCONUS_Ind_3km_ics_RAP_lbcs_RAP_suite_RRFS_v1beta_plot
nco_ensemble
nco_grid_RRFS_CONUS_3km_ics_FV3GFS_lbcs_FV3GFS_suite_GFS_v15_thompson_mynn_lam3km
2 changes: 1 addition & 1 deletion tests/WE2E/setup_WE2E_tests.sh
Original file line number Diff line number Diff line change
Expand Up @@ -45,7 +45,7 @@ function usage {

}

machines=( hera jet cheyenne orion wcoss2 gaea odin singularity macos noaacloud )
machines=( hera jet cheyenne derecho orion wcoss2 gaea odin singularity macos noaacloud )

if [ "$1" = "-h" ] ; then usage ; fi
[[ $# -le 2 ]] && usage
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2 changes: 1 addition & 1 deletion tests/build.sh
Original file line number Diff line number Diff line change
Expand Up @@ -21,7 +21,7 @@ function usage() {
exit 1
}

machines=( hera jet cheyenne orion wcoss2 gaea odin singularity macos noaacloud )
machines=( hera jet cheyenne derecho orion wcoss2 gaea odin singularity macos noaacloud )

[[ $# -gt 4 ]] && usage

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2 changes: 1 addition & 1 deletion ush/get_crontab_contents.py
Original file line number Diff line number Diff line change
Expand Up @@ -58,7 +58,7 @@ def get_crontab_contents(called_from_cron):
# themselves being called as cron jobs. In that case, we must instead
# call the system version of crontab at /usr/bin/crontab.
#
if MACHINE == "CHEYENNE":
if MACHINE == "CHEYENNE" or "DERECHO":
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if called_from_cron:
__crontab_cmd__ = "/usr/bin/crontab"

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35 changes: 35 additions & 0 deletions ush/machine/derecho.yaml
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@@ -0,0 +1,35 @@
platform:
WORKFLOW_MANAGER: rocoto
NCORES_PER_NODE: 128
SCHED: pbspro
TEST_CCPA_OBS_DIR: /glade/work/epicufsrt/contrib/UFS_SRW_data/develop/obs_data/ccpa/proc
TEST_MRMS_OBS_DIR: /glade/work/epicufsrt/contrib/UFS_SRW_data/develop/obs_data/mrms/proc
TEST_NDAS_OBS_DIR: /glade/work/epicufsrt/contrib/UFS_SRW_data/develop/obs_data/ndas/proc
DOMAIN_PREGEN_BASEDIR: /glade/work/epicufsrt/contrib/UFS_SRW_data/develop/FV3LAM_pregen
QUEUE_DEFAULT: main
QUEUE_FCST: main
QUEUE_HPSS: main
RUN_CMD_FCST: mpiexec -n ${PE_MEMBER01} --hostfile ${PBS_NODEFILE}
RUN_CMD_POST: mpiexec -n $nprocs --hostfile ${PBS_NODEFILE}
RUN_CMD_PRDGEN: mpiexec -n $nprocs --hostfile ${PBS_NODEFILE}
RUN_CMD_SERIAL: time
RUN_CMD_UTILS: mpiexec -n $nprocs --hostfile ${PBS_NODEFILE}
RUN_CMD_NEXUS: mpiexec -n $nprocs --hostfile ${PBS_NODEFILE}
RUN_CMD_AQMLBC: mpiexec -n ${NUMTS} --hostfile ${PBS_NODEFILE}
PRE_TASK_CMDS: '{ ulimit -s unlimited; ulimit -a; }'
TEST_EXTRN_MDL_SOURCE_BASEDIR: /glade/work/epicufsrt/contrib/UFS_SRW_data/develop/input_model_data
TEST_AQM_INPUT_BASEDIR: /glade/work/epicufsrt/contrib/UFS_SRW_data/develop/aqm_data
TEST_PREGEN_BASEDIR: /glade/work/epicufsrt/contrib/UFS_SRW_data/develop/FV3LAM_pregen
TEST_ALT_EXTRN_MDL_SYSBASEDIR_ICS: /glade/work/epicufsrt/contrib/UFS_SRW_data/develop/dummy_FV3GFS_sys_dir
TEST_ALT_EXTRN_MDL_SYSBASEDIR_LBCS: /glade/work/epicufsrt/contrib/UFS_SRW_data/develop/dummy_FV3GFS_sys_dir
TEST_VX_FCST_INPUT_BASEDIR: '{{ "/glade/work/epicufsrt/contrib/UFS_SRW_data/develop/output_data/fcst_" }}{{ "ens" if (global.NUM_ENS_MEMBERS > 0) else "det" }}{{ "/{{workflow.PREDEF_GRID_NAME}}" }}{% raw %}{% endraw %}'
FIXaer: /glade/work/epicufsrt/contrib/UFS_SRW_data/develop/fix/fix_aer
FIXgsi: /glade/work/epicufsrt/contrib/UFS_SRW_data/develop/fix/fix_gsi
FIXgsm: /glade/work/epicufsrt/contrib/UFS_SRW_data/develop/fix/fix_am
FIXlut: /glade/work/epicufsrt/contrib/UFS_SRW_data/develop/fix/fix_lut
FIXorg: /glade/work/epicufsrt/contrib/UFS_SRW_data/develop/fix/fix_orog
FIXsfc: /glade/work/epicufsrt/contrib/UFS_SRW_data/develop/fix/fix_sfc_climo
FIXshp: /glade/work/epicufsrt/contrib/UFS_SRW_data/develop/NaturalEarth
data:
ics_lbcs:
FV3GFS: /glade/p/ral/jntp/UFS_CAM/COMGFS/gfs.${yyyymmdd}/${hh}
2 changes: 1 addition & 1 deletion ush/valid_param_vals.yaml
Original file line number Diff line number Diff line change
Expand Up @@ -4,7 +4,7 @@
valid_vals_RUN_ENVIR: ["nco", "community"]
valid_vals_VERBOSE: [True, False]
valid_vals_DEBUG: [True, False]
valid_vals_MACHINE: ["HERA", "WCOSS2", "ORION", "JET", "ODIN", "CHEYENNE", "STAMPEDE", "LINUX", "MACOS", "NOAACLOUD", "SINGULARITY", "GAEA"]
valid_vals_MACHINE: ["HERA", "WCOSS2", "ORION", "JET", "ODIN", "CHEYENNE", "DERECHO", "STAMPEDE", "LINUX", "MACOS", "NOAACLOUD", "SINGULARITY", "GAEA"]
valid_vals_SCHED: ["slurm", "pbspro", "lsf", "lsfcray", "none"]
valid_vals_FCST_MODEL: ["ufs-weather-model"]
valid_vals_WORKFLOW_MANAGER: ["rocoto", "ecflow", "none"]
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