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Downloading data from SRA

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kpinal edited this page Oct 5, 2022 · 1 revision

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  1. Login to extreme/Saber. Start a screen session

Data Download

  1. Load SRA Toolkit modules
 module load
  1. Download data using fasterq-dump
``` fasterq-dump -

Example fasterq-dump SRR000001

The Research Informatics Core (RIC) provides a broad spectrum of bioinformatics services to the UIC and Chicago-area research communities, including genomics, transcriptomics, epigenomics, metagenomics, metabolomics, and proteomics analysis, as well as applications in statistical analysis, systems biology, and machine learning.

https://rrc.uic.edu/cores/research-informatics-core/

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