rm references to "files-uit"; fixes #4

these links were broken for a long time and were
not missed
now most of that is outdated anyway so we are zapping it

faqs/index.rst

@@ -536,10 +536,6 @@ next:
     done
     wait
 
-Complete examples with descriptive comments can be found here:
-:doc:`partasks.sh </uit/files-uit/partasks.sh/view>`,
-:doc:`dowork.sh </uit/files-uit/dowork.sh/view>`.
-
 
 How can I submit many jobs in one command?
 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
@@ -602,10 +598,6 @@ next:
     done
     wait
 
-Complete examples with descriptive comments can be found here:
-:doc:`partasks.sh </uit/files-uit/partasks.sh/view>`,
-:doc:`dowork.sh </uit/files-uit/dowork.sh/view>`.
-
 
 My ssh connections are dying / freezing.
 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
@@ -813,15 +805,3 @@ means that the program will run with 8 threads by default. You can
 choose the number of threads with (for 4 threads):
 
 ***export OMP\_NUM\_THREADS=4***
-
-
-
-
-
-Please consult the `MKL
-documentation <../../files-uit/math-lib-stuff/the-intel-math-kernel-library-mkl-10.x>`_
-for more details.
-
-
-
-.. vim:ft=rst

guides/developer/compilers.rst

@@ -114,55 +114,3 @@ wrappers that invokes all the necessary MPI stuff automatically for
 you. Therefore, everything else is the same for compiling MPI codes as
 for compiling plain C/C++ codes. Please check the `section abut MPI
 Libraries <mpi-libraries>`_ for more information about using MPI.
-
-
-
-Compiler Options
-~~~~~~~~~~~~~~~~
-
-Below you will find a complete list of compiler options for the
-Intel    compilers (the compiler options are essentially identical
-for the ifort, icc or icpc compilers), but we have also made a list with
-selected compiler options which we recommend for getting started, plus a
-list with some options we consider as "nice to know".
-
-* `List of compiler options ('ifort, icc or icpc -help')
-    <../../files-uit/icc-9-x-documents/icc-9-x-compiler-options-list>`_
-* `Options for getting
-   started <../../files-uit/icc-9-x-documents/icc-icpc-9-x-recommended-compiler-options>`_
-* `Options "nice to
-   know" <../../files-uit/icc-9-x-documents/icc-icpc-9-x-nice-to-know-options>`_
-* `Quick-Reference Guide to Optimization with Intel(R)
-   Compilers. <../../files-uit/intel-qref-222300_222300.pdf>`_
-
-Intel C/C++ Compiler Documentation
-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-
-In general we will recommend our users to approach the Intel C/C++
-documentation in the following order:
-
-#. Start out with the `'icc/icpc
-    -help  ' <../../files-uit/icc-9-x-documents/icc-9-x-compiler-options-list/>`_
-    information, where you will find all(  ?) the compiler options for
-    the compilers in a compact and structured way (this information is
-    identical for icc and icpc). Do not pay too much attention to the
-    subjects that the options are sorted under, because it may well happen
-    that you will find the option you are looking for under a different
-    subject than you first expected.
-#. If further / more detailed information is needed (or something is
-    missing in 'icc/icpc -help'), check out the manual page for the
-    icc/icpc compiler, '`man
-    icc/icpc <../../files-uit/icc-9-x-documents/man-icc-9.x.htm/view>`_  ',
-    where all options are described in detail (The manual pages are
-    identical for icc and icpc).
-#. If even further information is needed you should consult the rather
-    huge `reference manuals for the
-    icc/icpc  compilers <../manual/intel/c>`_. NB! Please notice
-    that these manuals also contain information for all other supported
-    OS's. For the most recent updated versions of the manuals, please check
-    the following `Intel
-    page <http://developer.intel.com/software/products/>`_ (Then go to:
-    Compilers -->  Linux --> Intel C/C++ Compiler for Linux --> Support
-    Resources).
-
-.. vim:ft=rst

guides/developer/libraries.rst

@@ -10,34 +10,3 @@ General comments on using libraries.
 
 Please follow this link to the `Metasenter page about
 libraries <http://docs.notur.no/metacenter/metacenter-documentation/metacenter_user_guide/general-on-using-libraries>`_.
-
-
-Math / Scientific library's installed on Stallo:
-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-
-Intel Math Kernel Library (MKL) is the recommended math /
-scientific librar  y on Stallo, containing Intel's versions of
-several of the other library's listed below.
-
-*  :doc:`MKL <../../files-uit/math-lib-stuff/the-intel-math-kernel-library-mkl-10.x>`
-   - the Intel Math Kernal Library - the recommended math /
-   scientific library on Stallo.
-*  :doc:`BLACS <../../files-uit/math-lib-stuff/blacs>` - the Basic
-   Linear Algebra Communication Subprograms library
-*  :doc:`FFTW <../../files-uit/math-lib-stuff/fftw>` - a C subroutine
-   library for computing the discrete Fourier transform (DFT)
-*  :doc:`GFS <../../files-uit/math-lib-stuff/gfs>` - the Gerris Flow
-   Solver
-*  :doc:`GotoBLAS <../../files-uit/math-lib-stuff/gotoblas>` - the
-   fastest(?) implementation of the Basic Linear Algebra Subroutines
-   (BLAS)
-*  :doc:`GTS <../../files-uit/math-lib-stuff/gts>` - the GNU
-   Triangulated Surface Library
-*  :doc:`GSL <../../files-uit/math-lib-stuff/gsl>` - the GNU Scientific
-   Library
-*  :doc:`LAPACK <../../files-uit/math-lib-stuff/lapack>` - the Linear
-   Algebra PACKage library
-*  :doc:`ScaLAPACK <../../files-uit/math-lib-stuff/scalapack>` - the
-   Scalable Linear Algebra PACKage library
-
-.. vim:ft=rst

guides/developer/optimization.rst

@@ -14,29 +14,6 @@ software and libraries
 for available and recommended libraries.
 
 
-Performance monitoring
-----------------------
-
- Some simple performance monitoring tools:
-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
-
-* :doc:`top <../../files-uit/performance-tools/testing>`  
- Find the use of memory, CPU time and other information about all running tasks
-*    :doc:`the time command <../files-uit/performance-tools/the-time-command>` 
-    time spent, memory and page faults
-
-*    :doc:`lsof <../files-uit/performance-tools/lsof>` 
-
-Monitor file access
-
-*    :doc:`strace <../files-uit/performance-tools/strace>`  trace system calls and signals
-*    :doc:`valgrind cache profiler <../files-uit/performance-tools/valgrind-cache-profiler>` 
-
-Simple tool to quantify cache misses
-
-*    :doc:`Compiler optimization report (intel) <../files-uit/performance-tools/compiler-optimization-report-intel>`
-
-Compiler option for optimization report
 
 Document Actions
 ''''''''''''''''
@@ -76,10 +53,6 @@ set, but using just a few iterations for the time stepping.
     else you need to use the ``-prof _dir`` flag, see the manual for
     details.
 
-To get started with more advanced optimization you can take a look at
-this pdf file from Intel.
-`intel-qref-222300 _222300.pdf <http://docs.notur.no/uit/files-uit/intel-qref-222300_222300.pdf>`_
-
 
 
 

guides/developer/parallel.rst

@@ -217,16 +217,6 @@ btl _sm _eager _limit.
 
 
 
-Appendix
-.........................
-
- :doc:`Here <../../files-uit/EagerTest.f90>` is a simple fortran program
-used to test eager send limits.
-
-
-
-
-
 Intel MPI
 .........................