v4.2.4.post20240205170611 release

v4.2.4.post20240205170611

Coverage Report

============================= test session starts ==============================
platform linux -- Python 3.10.13, pytest-8.0.0, pluggy-1.4.0
rootdir: /home/runner/work/v2-samplesheet-maker/v2-samplesheet-maker
plugins: cov-4.1.0
collected 22 items

tests/v2_samplesheet_maker/classes/test_samplesheet.py .
tests/v2_samplesheet_maker/classes/test_sections.py ................
tests/v2_samplesheet_maker/utils/test_cli.py .....

=============================== warnings summary ===============================
src/v2_samplesheet_maker/classes/super_sections.py:4
  /home/runner/work/v2-samplesheet-maker/v2-samplesheet-maker/src/v2_samplesheet_maker/classes/super_sections.py:4: DeprecationWarning: 
  Pyarrow will become a required dependency of pandas in the next major release of pandas (pandas 3.0),
  (to allow more performant data types, such as the Arrow string type, and better interoperability with other libraries)
  but was not found to be installed on your system.
  If this would cause problems for you,
  please provide us feedback at https://github.com/pandas-dev/pandas/issues/54466
          
    import pandas as pd

-- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html

---------- coverage: platform linux, python 3.10.13-final-0 ----------
Name                                                               Stmts   Miss  Cover
--------------------------------------------------------------------------------------
src/v2_samplesheet_maker/__init__.py                                   0      0   100%
src/v2_samplesheet_maker/classes/__init__.py                           0      0   100%
src/v2_samplesheet_maker/classes/samplesheet.py                       75     20    73%
src/v2_samplesheet_maker/classes/super_sections.py                   111     23    79%
src/v2_samplesheet_maker/enums.py                                     10      0   100%
src/v2_samplesheet_maker/globals.py                                    0      0   100%
src/v2_samplesheet_maker/models/__init__.py                            0      0   100%
src/v2_samplesheet_maker/models/bcl_convert_sections.py               52      2    96%
src/v2_samplesheet_maker/models/cloud_section.py                      28      6    79%
src/v2_samplesheet_maker/models/run_info_sections.py                  30      1    97%
src/v2_samplesheet_maker/models/samplesheet.py                        13     13     0%
src/v2_samplesheet_maker/models/tso500l_sections.py                   39      4    90%
src/v2_samplesheet_maker/run/__init__.py                               0      0   100%
src/v2_samplesheet_maker/run/v2_samplesheet_writer.py                 14     14     0%
src/v2_samplesheet_maker/section_classes/bcl_convert_sections.py      16      2    88%
src/v2_samplesheet_maker/section_classes/cloud_sections.py            29     13    55%
src/v2_samplesheet_maker/section_classes/run_info_sections.py         12      0   100%
src/v2_samplesheet_maker/section_classes/tso500l_sections.py          20      2    90%
src/v2_samplesheet_maker/utils/__init__.py                             0      0   100%
src/v2_samplesheet_maker/utils/cli.py                                 33      3    91%
src/v2_samplesheet_maker/utils/docopt_docs.py                          2      2     0%
src/v2_samplesheet_maker/utils/logger.py                              37      8    78%
--------------------------------------------------------------------------------------
TOTAL                                                                521    113    78%

======================== 22 passed, 1 warning in 0.80s =========================