v4.2.4.post20240220125103 release

v4.2.4.post20240220125103

Coverage Report

============================= test session starts ==============================
platform linux -- Python 3.10.13, pytest-8.0.1, pluggy-1.4.0
rootdir: /home/runner/work/v2-samplesheet-maker/v2-samplesheet-maker
plugins: cov-4.1.0
collected 29 items

tests/v2_samplesheet_maker/classes/test_samplesheet.py ...
tests/v2_samplesheet_maker/classes/test_sections.py ................
tests/v2_samplesheet_maker/utils/test_cli.py ..........

=============================== warnings summary ===============================
src/v2_samplesheet_maker/classes/samplesheet.py:10
  /home/runner/work/v2-samplesheet-maker/v2-samplesheet-maker/src/v2_samplesheet_maker/classes/samplesheet.py:10: DeprecationWarning: 
  Pyarrow will become a required dependency of pandas in the next major release of pandas (pandas 3.0),
  (to allow more performant data types, such as the Arrow string type, and better interoperability with other libraries)
  but was not found to be installed on your system.
  If this would cause problems for you,
  please provide us feedback at https://github.com/pandas-dev/pandas/issues/54466
          
    import pandas as pd

-- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html

---------- coverage: platform linux, python 3.10.13-final-0 ----------
Name                                                               Stmts   Miss  Cover
--------------------------------------------------------------------------------------
src/v2_samplesheet_maker/__init__.py                                   0      0   100%
src/v2_samplesheet_maker/classes/__init__.py                           0      0   100%
src/v2_samplesheet_maker/classes/samplesheet.py                      141     37    74%
src/v2_samplesheet_maker/classes/super_sections.py                   130     27    79%
src/v2_samplesheet_maker/enums.py                                     10      0   100%
src/v2_samplesheet_maker/globals.py                                    0      0   100%
src/v2_samplesheet_maker/models/__init__.py                            0      0   100%
src/v2_samplesheet_maker/models/bcl_convert_sections.py               56      2    96%
src/v2_samplesheet_maker/models/cloud_section.py                      36     10    72%
src/v2_samplesheet_maker/models/run_info_sections.py                  36      2    94%
src/v2_samplesheet_maker/models/samplesheet.py                        13     13     0%
src/v2_samplesheet_maker/models/tso500l_sections.py                   43      6    86%
src/v2_samplesheet_maker/run/__init__.py                               0      0   100%
src/v2_samplesheet_maker/run/v2_samplesheet_reader.py                 16     16     0%
src/v2_samplesheet_maker/run/v2_samplesheet_writer.py                 14     14     0%
src/v2_samplesheet_maker/section_classes/bcl_convert_sections.py      16      2    88%
src/v2_samplesheet_maker/section_classes/cloud_sections.py            30      6    80%
src/v2_samplesheet_maker/section_classes/run_info_sections.py         12      0   100%
src/v2_samplesheet_maker/section_classes/tso500l_sections.py          20      2    90%
src/v2_samplesheet_maker/utils/__init__.py                            25      3    88%
src/v2_samplesheet_maker/utils/cli.py                                 52      3    94%
src/v2_samplesheet_maker/utils/docopt_docs.py                          4      4     0%
src/v2_samplesheet_maker/utils/logger.py                              37      8    78%
--------------------------------------------------------------------------------------
TOTAL                                                                691    155    78%

======================== 29 passed, 1 warning in 0.89s =========================