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UM BRCF Bioinformatics Core

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  1. Connor Connor Public

    Deduplication based on custom inline DNA barcodes.

    Python 21 5

  2. Jacquard Jacquard Public

    Suite of command-line tools to expedite analysis of exome variant data from multiple patients and multiple variant callers.

    Python 7 2

  3. Katana Katana Public

    Command-line tool to soft-clip reads based on primer locations.

    Python 5 3

  4. Watermelon Watermelon Public

    RNA-Seq NGS Pipeline

    Python 3

  5. single_cell_env single_cell_env Public

    An environment for single-cell RNAseq

    Dockerfile 2

  6. 2021-04-26-umich-rnaseqDemystified 2021-04-26-umich-rnaseqDemystified Public

    RNA-Seq Demystified workshop

    HTML 2 1

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Showing 10 of 68 repositories
  • workshop-computational-foundations Public
    umich-brcf-bioinf/workshop-computational-foundations’s past year of commit activity
    HTML 0 0 0 0 Updated Jul 19, 2024
  • workshop-rnaseq-demystified Public
    umich-brcf-bioinf/workshop-rnaseq-demystified’s past year of commit activity
    HTML 0 CC-BY-4.0 0 0 0 Updated Jul 15, 2024
  • Watermelon Public

    RNA-Seq NGS Pipeline

    umich-brcf-bioinf/Watermelon’s past year of commit activity
    Python 3 Apache-2.0 0 2 1 Updated Jun 25, 2024
  • workshop-intro-single-cell Public

    Intro to Single Cell Workshop lesson plans

    umich-brcf-bioinf/workshop-intro-single-cell’s past year of commit activity
    HTML 0 CC-BY-4.0 0 4 0 Updated Apr 22, 2024
  • single_cell_env Public

    An environment for single-cell RNAseq

    umich-brcf-bioinf/single_cell_env’s past year of commit activity
    Dockerfile 2 0 0 0 Updated Mar 7, 2024
  • rsem_star Public

    Environment with rsem and star

    umich-brcf-bioinf/rsem_star’s past year of commit activity
    Dockerfile 0 0 0 0 Updated Mar 6, 2024
  • WAT_diffex Public

    Environment for Watermelon's differential expression steps

    umich-brcf-bioinf/WAT_diffex’s past year of commit activity
    Dockerfile 0 0 0 0 Updated Feb 7, 2024
  • proteomics_env Public
    umich-brcf-bioinf/proteomics_env’s past year of commit activity
    Dockerfile 0 0 0 0 Updated Jan 22, 2024
  • analysis_workflows Public

    Brief methods for common analyses

    umich-brcf-bioinf/analysis_workflows’s past year of commit activity
    HTML 0 0 0 0 Updated Aug 29, 2023
  • 2023-08-14-umich-rnaseq-demystified Public
    umich-brcf-bioinf/2023-08-14-umich-rnaseq-demystified’s past year of commit activity
    HTML 0 CC-BY-4.0 0 0 0 Updated Aug 15, 2023
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