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You can invoke expand specifying a file of regex expressions to include as a subset of selected fields. As expand considers each regex, if it can't find any matching column, it logs a warning and continues. It is sometimes desirable that Jacquard should explicitly fail if a specified regex does not match any columns. By default, it would work as implemented - however if invoked in strict mode it would fail like so:
jacquard expand --strict_selected_column --selected_columns_file cols.txt foo.vcf foo.txt
Error: The selected_columns_file [cols.txt] could not match 5 of 25 specified regular expressions. See log for details.
Likely an adjustment in expand.py:_filter_column_list().
The text was updated successfully, but these errors were encountered:
You can invoke expand specifying a file of regex expressions to include as a subset of selected fields. As expand considers each regex, if it can't find any matching column, it logs a warning and continues. It is sometimes desirable that Jacquard should explicitly fail if a specified regex does not match any columns. By default, it would work as implemented - however if invoked in strict mode it would fail like so:
Likely an adjustment in expand.py:_filter_column_list().jacquard expand --strict_selected_column --selected_columns_file cols.txt foo.vcf foo.txt
Error: The selected_columns_file [cols.txt] could not match 5 of 25 specified regular expressions. See log for details.
The text was updated successfully, but these errors were encountered: