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Merge dev branch #128

Merged
merged 109 commits into from
May 12, 2023
Merged

Merge dev branch #128

merged 109 commits into from
May 12, 2023

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cweniger
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New features:

  • three additional autoregressive models
  • Slice sampler
  • AuxLoss
  • Spectral embedding for ratio estimation

cweniger and others added 30 commits December 6, 2022 11:58
@cweniger
Noisy logratios in coverage estimates
2e60cf1 
	modified:   lightning/core.py
@cweniger
Black code
44a5ba6
@cweniger
Add example notebook for model comparison
817987c 
3 Changes to be committed:
	new file:   0I-Model comparison.ipynb
@cweniger
Use tqdm.auto for better progress bars in notebooks.
fdd3402 
	modified:   swyft/lightning/simulator.py
@cweniger
Enable per-marginal features in default LogRatioEstaimators
1cad355 
	modified:   networks/classifier.py
@cweniger
Merge branch 'master' into dev
5841cba
@cweniger
Fixes LogRatioEstimator_1dim_Gaussian
283ac6c 
 Changes to be committed:
	modified:   lightning/estimators.py
@cweniger
Black code
7d45c72
@cweniger
Add minstd arguemnt to Gaussian posterior estimator.
5b1b3ba 
 Changes to be committed:
	modified:   estimators.py
@cweniger
Automatic plotting axes.
7be8741 
 Changes to be committed:
	modified:   plot2.py
@cweniger
Fix math in docstrings
a4aa82a 
 Changes to be committed:
	modified:   lightning/estimators.py
@cweniger
Black code
c48b59d
@cweniger
Merge branch 'master' into dev
c47ee40
@cweniger
Set return type of Samples for integer index to Sample.
690e3a8
@cweniger
Add get_class_probs convenience function
7fc474f 
 Changes to be committed:
	modified:   lightning/__init__.py
	modified:   lightning/utils.py
@cweniger
Add prototype spectral parameter embedding for Ndim ratio estimation
d598c77 
 Changes to be committed:
	modified:   lightning/estimators.py
	modified:   lightning/utils.py
	modified:   networks/classifier.py
Zarr store returns Sample instances as individual items
8ea3111
@cweniger
Add get_z_estimate to Gaussian estimator
2753b0c
@cweniger
Add AuxLoss for optional contributions ot the loss function.
8551d4d
@cweniger
Added SwyftSimpleSliceSampler
a4dae50
@cweniger
Enable spectral embedding for _1dim estimators and bugfix
92ad9da
@cweniger
Fix: AuxLoss and LogRatioSamples return types properly handled
055fad4
@cweniger
Improvements for SwyftSimpleSliceSampler
b9167f3 
- GPU enabled (depends on X_init device)
- On-the-fly estimate of covariance of X_live to improve proposal distributions
@cweniger
Several updates to SwyftSimpleSliceSampler
7668268
@cweniger
Add minimal version of autoregressive estimator for high-dimensional …
320226d 
…ratio estimation
@cweniger
Bugfix autoregressive model
a5652d7
@cweniger
Exposing parameters in SwyftSimpleSliceSampler
6a087a4
@cweniger
Add slice sampling example notebook
3dd2bdd
@cweniger
Add LogRatioEstimator_Gaussian and LogRatioEstimator_Autoregressive_G…
4370894 
…aussian
@cweniger
Notebook example for LogRatioEstimator_Autoregressive_Gaussian
c96a269
@cweniger
Rename tasks
f43aaa8
@cweniger
Towards unified global analaysis tasks
c138826
@cweniger
Fixing image reconstruction example.
2effb22 
The approach apparently works, but oh man it really depends on training
properly in order to get precise results.
@cweniger
Add yet another Gaussian Autoregressive model version...
28d2972
@cweniger
Updates Task2 and simulator.
95c7f4e
@cweniger
Clean up Task2
f5422fb
@cweniger
Make Phi optimization optional in Gaussian_Autoregressive
ed6336b
@cweniger
Updates simulators.py task 1
53dbc52
@cweniger
Make lr decay verbose.
3b7b831
@cweniger
Update task1 networks and Fisher forecasting
96c2848
@cweniger
Update task1 networks and Fisher forecasting
24884ae
@cweniger
updates tasks
4892ac3
@cweniger
Add residual notebooks regarding task 1.
d608346
@cweniger
Fix primer examples.
ceecfb8
@cweniger
Remove Alex from doc copyright
a1db84d
@cweniger
Add goodness of fit
7e33ab4
@cweniger
Remove deprecated and primer notebooks.
2fd6d95
@cweniger
Merge branch 'master' into dev
a0796b6
@cweniger
Update conf.py author list
fff73e8
@cweniger
Rename LogRatioEstimator_Gaussian_Autoregressive to LogRatioEstimator…
f8f733b 
…_Gaussian_Autoregressive_Z
@cweniger
Expose slice sampler
791993d
@cweniger
Move unfinished tutorial notebooks to separate branch.
7c90dac
@cweniger cweniger requested a review from NoemiAM May 11, 2023 21:51
@cweniger cweniger merged commit 344b3e9 into master May 12, 2023
@cweniger
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Closes #117

@cweniger cweniger changed the title Current dev branch Merge dev branch May 12, 2023
This was referenced May 12, 2023
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@NoemiAM NoemiAM NoemiAM approved these changes

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@cweniger @NoemiAM